Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq22 107 4e-18 >seq22 Length=1908885 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | |||||| || | || || ||| Sbjct 663145 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCA 663204 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || || ||||||||||| | || Sbjct 663205 GCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 663264 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||| || || ||||| || || || ||||| || || || || Sbjct 663265 ACGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGCGTC 663324 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 663325 TTGACGAAGATCTGCAT 663341 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || || || | || ||||| | || || || Sbjct 662461 GTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCATCTTCCAACTGCTTGCCC 662520 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| || ||||| || || || || || ||||||||||| | || Sbjct 662521 GCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 662580 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || ||| || || || ||||| |||||||| || || || Sbjct 662581 ACGTTGTCGATTGTGTCCGAAGATTCCACTTCCAGCGTAATCGTCTTACCCGTCAGGGTC 662640 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 662641 TTGACGAAAATCTGCAT 662657 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || || || | || || || || || || ||| Sbjct 662917 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 662976 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 ||||| || || | ||| || || || || || || || || ||||||||| ||||| || Sbjct 662977 GCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATC-TTGCTCTT 663035 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || ||| | || ||||| || || || ||||| || || ||||| Sbjct 663036 GACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGT 663095 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 663096 CTTGACAAAGATTTGCAT 663113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397765651444