Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq22 107 4e-18
>seq22
Length=1908885
Score = 107 bits (118), Expect = 4e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || | |||||| || | || || |||
Sbjct 663145 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCA 663204
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| || || || || || || || || ||||||||||| | ||
Sbjct 663205 GCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 663264
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||||||| || || ||||| || || || ||||| || || || ||
Sbjct 663265 ACGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGCGTC 663324
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 663325 TTGACGAAGATCTGCAT 663341
Score = 104 bits (114), Expect = 5e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || ||||| || || || | || ||||| | || || ||
Sbjct 662461 GTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCATCTTCCAACTGCTTGCCC 662520
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || | ||| || ||||| || || || || || ||||||||||| | ||
Sbjct 662521 GCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 662580
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || || ||| || || || ||||| |||||||| || || ||
Sbjct 662581 ACGTTGTCGATTGTGTCCGAAGATTCCACTTCCAGCGTAATCGTCTTACCCGTCAGGGTC 662640
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 662641 TTGACGAAAATCTGCAT 662657
Score = 102 bits (112), Expect = 2e-16
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||| || || ||||| || || || | || || || || || || |||
Sbjct 662917 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 662976
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481
||||| || || | ||| || || || || || || || || ||||||||| ||||| ||
Sbjct 662977 GCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATC-TTGCTCTT 663035
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
||||| || | || ||| | || ||||| || || || ||||| || || |||||
Sbjct 663036 GACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGT 663095
Query 104542 TTTTACAAATATCTGCAT 104559
|| ||||| || |||||
Sbjct 663096 CTTGACAAAGATTTGCAT 663113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151397765651444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |