Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq11 114 1e-20 >seq11 Length=5116797 Score = 114 bits (126), Expect = 1e-20 Identities = 182/258 (71%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 5502 CGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTT 5561 |||||||| ||||| ||||| ||||| | | | ||||||| ||| ||||| Sbjct 4513522 CGCCCGTGCTGCCGAACCCGCCGGCGCCGCGCACGCTCGCGTCCAGCTGCGCGACCTCGA 4513463 Query 5562 CCACATCGGGGAACGCAGCGCGCTCGCAGATCA-GCTGCGCTATTCGGTCGCCCGTCTTT 5620 | || ||||| | || |||||| ||| || ||||||| | |||||||||| Sbjct 4513462 CGACGTCGGGCGTCACAATGCGCTC-CAGCACAAGCTGCGCCACGCGGTCGCCCGCGGCA 4513404 Query 5621 ACCTCGAAATCGTTGT---GGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 | | || |||||| || || |||||| |||| ||| | ||| | |||||||||| Sbjct 4513403 ATGGCAAAGTCGTTGACGGGGTCGTGGTTGAAAAGCAGCACACGCACCTGGCCGCGGTAG 4513344 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 ||||| || || || || || ||| ||||| ||||||||| | || || || ||||| Sbjct 4513343 TCGGCATCAATGACACCGGCACCCGTATCGATAAAGTGCTTGGCGGCGAGCCCCGAGCGC 4513284 Query 5738 GGAGCCACGCGGCCGTAG 5755 || || | |||||||||| Sbjct 4513283 GGGGCAATGCGGCCGTAG 4513266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054174624616