Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq11 114 1e-20
>seq11
Length=5116797
Score = 114 bits (126), Expect = 1e-20
Identities = 182/258 (71%), Gaps = 5/258 (2%)
Strand=Plus/Minus
Query 5502 CGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTT 5561
|||||||| ||||| ||||| ||||| | | | ||||||| ||| |||||
Sbjct 4513522 CGCCCGTGCTGCCGAACCCGCCGGCGCCGCGCACGCTCGCGTCCAGCTGCGCGACCTCGA 4513463
Query 5562 CCACATCGGGGAACGCAGCGCGCTCGCAGATCA-GCTGCGCTATTCGGTCGCCCGTCTTT 5620
| || ||||| | || |||||| ||| || ||||||| | ||||||||||
Sbjct 4513462 CGACGTCGGGCGTCACAATGCGCTC-CAGCACAAGCTGCGCCACGCGGTCGCCCGCGGCA 4513404
Query 5621 ACCTCGAAATCGTTGT---GGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677
| | || |||||| || || |||||| |||| ||| | ||| | ||||||||||
Sbjct 4513403 ATGGCAAAGTCGTTGACGGGGTCGTGGTTGAAAAGCAGCACACGCACCTGGCCGCGGTAG 4513344
Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737
||||| || || || || || ||| ||||| ||||||||| | || || || |||||
Sbjct 4513343 TCGGCATCAATGACACCGGCACCCGTATCGATAAAGTGCTTGGCGGCGAGCCCCGAGCGC 4513284
Query 5738 GGAGCCACGCGGCCGTAG 5755
|| || | ||||||||||
Sbjct 4513283 GGGGCAATGCGGCCGTAG 4513266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430054174624616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |