Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1 98.7 2e-16
seq38 91.5 2e-14
>seq1
Length=1786981
Score = 98.7 bits (108), Expect = 2e-16
Identities = 84/101 (83%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATC-GCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||| | | |||| ||| || || ||||| || || ||||| ||||| |||||
Sbjct 33000 GCTAAGCGTCACCGGAAGAT-TCTCCGTGACAACATTCAGGGCATCACTAAGCCTGCTAT 33058
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||||||||| |||||||| || ||||||||| ||||||
Sbjct 33059 TCGTCGTCTGGCGCGTCGTGGCGGTGTCAAGCGTATCTCTG 33099
>seq38
Length=4042462
Score = 91.5 bits (100), Expect = 2e-14
Identities = 83/102 (81%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| || | ||| |||||| || ||||| || || || |||||||| || |
Sbjct 1108886 CGCCAAGCGTCACCGGAAGAT-TCTTCGTGACAACATTCAGGGCATTACCAAGCCCGCCA 1108828
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
| ||||||||||| |||||||| || ||||||||| | ||||
Sbjct 1108827 TTCGTCGTCTGGCGCGTCGTGGCGGTGTCAAGCGTATTTCTG 1108786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075160684799
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |