Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 2e-16 seq38 91.5 2e-14 >seq1 Length=1786981 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATC-GCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | | |||| ||| || || ||||| || || ||||| ||||| ||||| Sbjct 33000 GCTAAGCGTCACCGGAAGAT-TCTCCGTGACAACATTCAGGGCATCACTAAGCCTGCTAT 33058 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||||| |||||||| || ||||||||| |||||| Sbjct 33059 TCGTCGTCTGGCGCGTCGTGGCGGTGTCAAGCGTATCTCTG 33099 >seq38 Length=4042462 Score = 91.5 bits (100), Expect = 2e-14 Identities = 83/102 (81%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | ||| |||||| || ||||| || || || |||||||| || | Sbjct 1108886 CGCCAAGCGTCACCGGAAGAT-TCTTCGTGACAACATTCAGGGCATTACCAAGCCCGCCA 1108828 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 | ||||||||||| |||||||| || ||||||||| | |||| Sbjct 1108827 TTCGTCGTCTGGCGCGTCGTGGCGGTGTCAAGCGTATTTCTG 1108786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075160684799