Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq41 156 5e-33 seq42 86.0 8e-12 >seq41 Length=3900177 Score = 156 bits (172), Expect = 5e-33 Identities = 456/687 (66%), Gaps = 28/687 (4%) Strand=Plus/Plus Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 ||||| | || ||||||| || |||||| |||| | || ||| || ||||| || || Sbjct 918141 CATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGG 918200 Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 || || ||||| || || | || ||||| | || | ||||| || ||| ||| Sbjct 918201 TCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTC 918260 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353 || || ||||||||| | | | ||| | ||||||||| |||||||| ||| || | Sbjct 918261 TTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATG--CAGA 918318 Query 63354 A--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63411 | | || ||||| ||||| || |||||||| | ||| | || ||||| || | || | Sbjct 918319 ATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACAC 918378 Query 63412 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471 | ||| || || || ||||| ||| | || || || |||| || || || | | Sbjct 918379 GAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAG 918438 Query 63472 CACGAAT---ATT-ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 ||||||| || || ||| | |||| || || || ||| | || ||||| | || Sbjct 918439 CACGAATGCGATGGAC--ATTCA--GACCGATGCCACCAGCCGTCTTGGAGATCATGGCA 918494 Query 63528 CATCGTTTTAA-CGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAA 63586 || ||| || | |||||| ||||| ||||| ||||||||||| |||||| | || || Sbjct 918495 CA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAA 918553 Query 63587 ACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 ||| |||| | ||| | || || || || || || | || || || || | Sbjct 918554 GCAGGAGGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCAT 918609 Query 63643 GCGTAAACCA-TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63701 ||||||| | || ||| | |||| ||||| ||||| | | | || | || ||| Sbjct 918610 GCGTAAAGAACTTGTTCGACATGTAG-TTGTATGTCTCGACAACACGCTCCACAT--CAT 918666 Query 63702 TG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63759 | || || || || || ||||| | ||||||||| || | || |||||||| Sbjct 918667 CGCCCCAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTAC 918726 Query 63760 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63819 | | || | | |||||| |||| || || || ||||| || | ||| | Sbjct 918727 CATCGAGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGA 918786 Query 63820 AGTCTCGTTCGTAAATAATAACCGAGT 63846 |||| || ||||| | ||| |||||| Sbjct 918787 AGTCCCGGTCGTAGACAATGGCCGAGT 918813 >seq42 Length=705881 Score = 86.0 bits (94), Expect = 8e-12 Identities = 150/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || || || ||| |||||| |||||||| | ||| || || ||||| Sbjct 321640 AACAGCAGGCAGGCAAAGTCGGTGTGCAGCCCCTCGTCGCGGGAAATCAGCTCATTGGAG 321699 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| ||||||||||| || ||||| || ||||||| ||| | || Sbjct 321700 AAAGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAAGAGAAGGCGCCG 321759 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33471 ||||| || || || || ||||| || || | || | || || | || | Sbjct 321760 CTGAAGAAAATGCCCTCAACGGCAGCGAATGCCACGAGGCGCTGCGCAAAGGTGGACTCC 321819 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 ||||| ||||| ||||||| ||||||||||| Sbjct 321820 TTGTCAGCAATCCAGCGCAGAGCCCAGTCGGCCTTCTT 321857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946865165880