Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq41 156 5e-33
seq42 86.0 8e-12
>seq41
Length=3900177
Score = 156 bits (172), Expect = 5e-33
Identities = 456/687 (66%), Gaps = 28/687 (4%)
Strand=Plus/Plus
Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233
||||| | || ||||||| || |||||| |||| | || ||| || ||||| || ||
Sbjct 918141 CATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGG 918200
Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293
|| || ||||| || || | || ||||| | || | ||||| || ||| |||
Sbjct 918201 TCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTC 918260
Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353
|| || ||||||||| | | | ||| | ||||||||| |||||||| ||| || |
Sbjct 918261 TTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATG--CAGA 918318
Query 63354 A--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63411
| | || ||||| ||||| || |||||||| | ||| | || ||||| || | || |
Sbjct 918319 ATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACAC 918378
Query 63412 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471
| ||| || || || ||||| ||| | || || || |||| || || || | |
Sbjct 918379 GAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAG 918438
Query 63472 CACGAAT---ATT-ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527
||||||| || || ||| | |||| || || || ||| | || ||||| | ||
Sbjct 918439 CACGAATGCGATGGAC--ATTCA--GACCGATGCCACCAGCCGTCTTGGAGATCATGGCA 918494
Query 63528 CATCGTTTTAA-CGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAA 63586
|| ||| || | |||||| ||||| ||||| ||||||||||| |||||| | || ||
Sbjct 918495 CA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAA 918553
Query 63587 ACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642
||| |||| | ||| | || || || || || || | || || || || |
Sbjct 918554 GCAGGAGGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCAT 918609
Query 63643 GCGTAAACCA-TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63701
||||||| | || ||| | |||| ||||| ||||| | | | || | || |||
Sbjct 918610 GCGTAAAGAACTTGTTCGACATGTAG-TTGTATGTCTCGACAACACGCTCCACAT--CAT 918666
Query 63702 TG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63759
| || || || || || ||||| | ||||||||| || | || ||||||||
Sbjct 918667 CGCCCCAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTAC 918726
Query 63760 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63819
| | || | | |||||| |||| || || || ||||| || | ||| |
Sbjct 918727 CATCGAGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGA 918786
Query 63820 AGTCTCGTTCGTAAATAATAACCGAGT 63846
|||| || ||||| | ||| ||||||
Sbjct 918787 AGTCCCGGTCGTAGACAATGGCCGAGT 918813
>seq42
Length=705881
Score = 86.0 bits (94), Expect = 8e-12
Identities = 150/218 (69%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| || || || || ||| |||||| |||||||| | ||| || || |||||
Sbjct 321640 AACAGCAGGCAGGCAAAGTCGGTGTGCAGCCCCTCGTCGCGGGAAATCAGCTCATTGGAG 321699
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || || || ||||| ||||||||||| || ||||| || ||||||| ||| | ||
Sbjct 321700 AAAGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAAGAGAAGGCGCCG 321759
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33471
||||| || || || || ||||| || || | || | || || | || |
Sbjct 321760 CTGAAGAAAATGCCCTCAACGGCAGCGAATGCCACGAGGCGCTGCGCAAAGGTGGACTCC 321819
Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509
||||| ||||| ||||||| |||||||||||
Sbjct 321820 TTGTCAGCAATCCAGCGCAGAGCCCAGTCGGCCTTCTT 321857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946865165880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |