Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq41 417 2e-111 seq42 91.5 4e-13 >seq41 Length=3900177 Score = 417 bits (462), Expect = 2e-111 Identities = 1170/1773 (66%), Gaps = 26/1773 (1%) Strand=Plus/Minus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATGGTGATATTGTTGAACGCCCGCA 363458 ||||| ||||| |||||||| ||| || ||||| | || || || || ||||| Sbjct 918763 AAGACCCTGGAGCGGTCCTACCTC-CTCAAGCTCGATGGTAAGATCGTCGAGCGGCCGCA 918705 Query 363459 GCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGA 363518 ||| ||| | ||||| || || |||||||| || ||||| || | | || Sbjct 918704 GCACATGATTATGCGCGTGGCCGTTGGTATCTGGGGCGATGATGTGGAGCGTGTTGTCGA 918645 Query 363519 AACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAATGTACAAT 363576 ||||| || || | | || | | || || ||||| ||| |||| || | | ||| Sbjct 918644 GACATACAA-CTAC-ATGTCGAACAAGTTCTTTACGCATGCCTCGCCGACGCTTTTCAAC 918587 Query 363577 GCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCC 363636 || || || | | | ||| |||| || ||||| || || | |||||||| ||| | Sbjct 918586 GCCGGCACGCCCCAGGCTCAGCTGTCCTCCTGCTTCCTCGTAGACATGAAGGATGATAGC 918527 Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 || ||||| |||| ||||| || |||| ||||| | || ||||||| || || || Sbjct 918526 ATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACGGCTGGTGGC 918467 Query 363697 ATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCAC-AGGGG 363754 || ||| | |||| ||||||| || | | ||||||| |||||| | || Sbjct 918466 ATCGGTCTGAATGTCCATCGCATTCGTGCTACCGG-CTCTTACATTGCCGGCACTAACGG 918408 Query 363755 GATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCG 363814 | | || || || | | |||||||||||||| || |||| || || | ||||| | Sbjct 918407 CACA-TCCAACGGCATCATCCCCATGCTTCGTGTCTTCAACAACACGGCCCGCTACGTGG 918349 Query 363815 ACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT-TGCTATGTATCTCGAGCCTCATCATGCC 363873 | |||||||| ||||| || || || ||| || || | ||||| |||||| Sbjct 918348 ATCAGGGTGGCAACAAGCGGCCCGGTGCATTCTGC-ATCTACTTGGAGCCGTGGCATGCC 918290 Query 363874 GATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGT 363933 ||| | |||||||| || || || ||||| ||| || || ||||| | ||||| ||| Sbjct 918289 GATGTCTTTGAGTTCCTCGACCTGCGGAAGAACCAAGGCAAGGAGGAGGTCCGTGCCCGT 918230 Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAG 363993 ||||| ||| ||||| ||| | | |||| || |||||||| |||||| | | | | Sbjct 918229 GATCTTTTCCTCGCACTCTGGATCCCCGACCTGTTCATGAAGCGTGTGGAG--AAGAACG 918172 Query 363994 A--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACG 364051 | ||| | || | ||||| ||||||| | || || | ||| | || || | Sbjct 918171 GCGAGTGGACGCTGATGTGCCCCAACGAATGCGCCGGCCTGGCTGATTGCTACGGCGAGG 918112 Query 364052 ACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCG 364111 | | || ||||| ||||| || || || ||||| | ||| |||| || | Sbjct 918111 AGTTTGAGGCTCTGTACGAGAAATACGAGCGCGAGGGTCGCGGTCGCAAGAAGATCAAGG 918052 Query 364112 CACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGT 364171 | |||||||| |||| |||||| |||| |||||| ||||| || | |||| ||| Sbjct 918051 CCCAGAAGCTGTGGTATGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCCTTCATGC 917992 Query 364172 TGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGA 364231 | ||||| || |||||||||||| ||||||| || |||| ||||| || | |||| Sbjct 917991 TCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCC-GCAGC 917933 Query 364232 GC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAAC 364290 | ||| | || || |||||| | || ||| | ||||| |||||| || || || ||| Sbjct 917932 TCGAACTTGTGCACGGAGATTGTCGAGTACTCGGCTCCGGACGAGGTGGCTGTGTGCAAC 917873 Query 364291 CTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTA------CTTTTGACCACCAG 364344 | || || | || |||||| | || || | || | | | |||| |||| Sbjct 917872 TTGGCCTCTTTGGCTCTTCCGTCTTTCGTCGACTATAACAACGAGTCGTATGACTTCCAG 917813 Query 364345 CATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAAT 364404 || | || || || | | | | |||| || || | || || || Sbjct 917812 AGACTGCACGATGTCACGCAGCTGGTTGTCCGCAACCTGAACCGCATCATTGATGTCAAC 917753 Query 364405 TATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGT 364464 || || || | || ||||| | ||| ||||| || || || |||||||| ||| Sbjct 917752 TACTACCCTGTGCCAGAAGCACGGAACAGTAACATGCGCCACCGTCCCATTGGTCTGGGT 917693 Query 364465 GTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCT 364524 || ||||| || || |||| || || ||| ||| | ||||| || || || || Sbjct 917692 GTGCAGGGTCTGGCGGACGCCTTCCTGGCGCTGCGCATGCCCTTTGAGTCTCCCGAGGCA 917633 Query 364525 CGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGT 364584 || | || || ||| || ||||||| || || || || || |||| | ||||| Sbjct 917632 CGCCTGCTGAACAAGCAGGTCTTTGAGACCATCTACCACGCGGCGCTGACGGAGTCGTGC 917573 Query 364585 GATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGA 364644 || |||| || | |||| | ||| || ||||||||||| ||| | |||||||| Sbjct 917572 GAGCTGGCCAAGATTGAGGGCACCTACCAGACATATGAGGGGTCTCCTGTGTCGCAGGGT 917513 Query 364645 AAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTA 364704 | | ||| || | ||| ||||||||||||| | || ||| | ||||| |||| Sbjct 917512 ATTCTGCAGCCCGACATGTGGGATGTCACGCCATCGGACCTGTGGGATTGGGACTCGCTG 917453 Query 364705 CGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACG 364764 || || | ||| |||| ||| |||||| || | ||||| ||||| ||| Sbjct 917452 CGGCTGAAGATCAAGGAGCACGGTGTGCGCAACAGTCTGCTGGTGGCGCCGATGCCGACG 917393 Query 364765 GCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTT 364824 || || || ||||||| || || ||||||||||||||||| |||| ||| ||| || Sbjct 917392 GCGTCGACGTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCGTACACATCCAACATT 917333 Query 364825 TATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGAT 364884 || || || || || || |||| || || | ||| || || || || ||||||| Sbjct 917332 TACTCGCGGCGTGTGCTGGCCGGTGAGTTCCAGGTGGTCAACCCGTGGCTGCTCAAGGAC 917273 Query 364885 CTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGT 364944 || |||| || |||||| |||| |||||||||| ||||| |||| || ||| Sbjct 917272 CTGGTCGACATGGGTCTGTGGTCGGACAACATGAAGAACCGCATCATTGCCGAGAACGGT 917213 Query 364945 TCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGG 365004 || | ||||||||||| | || | ||| | ||| || | ||||| || || ||| Sbjct 917212 TCGATCCAGAACATTCCCAACATCCCGGCAGACATCAAGGCTCTGTACAAGACGGTGTGG 917153 Query 365005 GAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAG 365064 || || || ||| || | | | ||||| || || || ||||| |||||| ||| Sbjct 917152 GAGATCTCTCAGCGGACGATTGTGCAGATGGCTGCGGACCGTGGTGCCTTTATCGACCAG 917093 Query 365065 AGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCAT 365124 |||||| | ||| | |||| | |||| ||| | |||| | || |||||| Sbjct 917092 TCGCAGTCGCTGAACATCCACATGCGTGAGCCGACCATGGGCAAGATCACGAGCATGCAC 917033 Query 365125 TTCTACGGG-TGGAAATCCGGTCTTAAGACAGG 365156 ||| ||||| ||||| || || ||||| || Sbjct 917032 TTC-ACGGGCTGGAAGCTGGGCCTGAAGACGGG 917001 >seq42 Length=705881 Score = 91.5 bits (100), Expect = 4e-13 Identities = 152/217 (70%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGA---ACAATGAACGTTCA--TTCGCGGAAC 22492 || ||||| || ||||| ||| ||||| |||| || || || || ||| | | Sbjct 321857 AAGAAGGCCGACTGGGCTCTGCGCTGGATTGCTGACAAGGA--GTCCACCTTTGCGCAGC 321800 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552 | || | ||||| |||| ||||| ||||||||||| || || || | | | |||| Sbjct 321799 GCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGGCGCCTTCTCTTCCATCT 321740 Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612 | ||||| || || |||| | ||||| ||||| || || || |||||| | ||| || Sbjct 321739 TCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATTTCCC 321680 Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649 | || ||||| || || ||||| ||||| || |||| Sbjct 321679 GCGACGAGGGGCTGCACACCGACTTTGCCTGCCTGCT 321643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352881933626