Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq41 217 1e-51 seq22 134 1e-26 seq11 116 3e-21 >seq41 Length=3900177 Score = 217 bits (240), Expect = 1e-51 Identities = 870/1342 (65%), Gaps = 37/1342 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| ||||||| |||||| ||| | || | ||| || ||| | || Sbjct 917292 TTGACCACCTGGAACTCACCGGCCAGCACACGCCGCGAGTAAATGTTGGATGTGTACGGC 917351 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| |||||||| || || | |||| || || ||||| ||||||| Sbjct 917352 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGACGTCGACGCCGTCGGCATCGGCGCCACC 917411 Query 145178 A--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTC--CTTTAGCGTACCCCAATC 145233 | | | || ||||||| ||||||| |||||| |||| | |||| ||||||| Sbjct 917412 AGCAGACTG--TTGCGCACACCGTGCTCCTTGAT--CTTCAGCCGCAGCGAGTCCCAATC 917467 Query 145234 CCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 ||| || | ||| | || |||||||||||| ||||| ||| |||| | || Sbjct 917468 CCACAGGTCCGATGGCGTGACATCCCACATGTCGGGCTGCAGAATACCCTGCGACACAGG 917527 Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAG 145353 || | | | | ||| ||||| | | ||||| |||||||| | || ||| Sbjct 917528 AGACCCCTCATATGTCTGGTAGGTGCCCTCAATCTTGGCCAGCTCGCACGACTCCGTCAG 917587 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 || || || || ||||| | ||| |||| ||||| || || ||| Sbjct 917588 CGCCGCGTGGTAGATGGTCTCAAAGACCTGCTTGTTCAGCAGGCGTGCCTCGGGAGACTC 917647 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | |||||||||||| | || || || || || ||||| | |||| || ||||| Sbjct 917648 AAAGGGCATGCGCAGCGCCAGGAAGGCGTCCGCCAGACCCTGCACACCCAGACCAATGGG 917707 Query 145474 CCGATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATAGGATA-TCGATTACGGTCGATA 145531 || || |||||| || ||| | | || | | ||| || | | | || || || Sbjct 917708 ACGGTGGCGCATGTTACTGTTCCGTG-CTTCTGGCACAGGGTAGTAGTTGAC-ATCAATG 917765 Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC 145591 || |||| ||| || || || | || || | | ||| | | |||||| || Sbjct 917766 ATGCGGTTCAGGTTGCGGACAACCAGCTGCGTGACATCGTGCAGTCTCTGGAAGTCATAC 917825 Query 145592 CGAGCCTCGTCAACGACCAC-ACAGCTATTGACG-GCGATCGACGCCAAATTACAAACTG 145649 | | || | | | || | || | || | || | || ||||| || || || | Sbjct 917826 GACTCGTTGTTATAGTCGACGAAAG--ACGGAAGAGCCAAAGAGGCCAAGTTGCACACAG 917883 Query 145650 CCGTCTCCT-CGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTG 145705 || ||| | ||| | || ||| | || ||||| | |||||| || ||| | | Sbjct 917884 CCACCTCGTCCGGAGCCG-AGTACTCGACAATCTCCGTGCACAAGTTCGAGCTGC---GG 917939 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 ||||| ||||| || | ||| || || || | |||||| |||||||||||||||| | Sbjct 917940 ATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAG 917999 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACC 145825 || ||| |||||| ||||| ||||| || | || | ||| || | | Sbjct 918000 GGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCATACCACAGCTTCTGGGCCTTGATC 918059 Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 | || | ||| ||||| ||||||||| ||| || |||||||| | ||| Sbjct 918060 TTCTTGCGACCGCGACCCTCGCGCTCGTATTTCTCGTACAGAGCCTCAAACTCCTCGCCG 918119 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 |||||||| | |||||||| || | |||||| |||||||||| ||| ||||||| Sbjct 918120 TAGCAATCAGCCAGGCCGGCGCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTC 918179 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTG 146005 | || |||| ||| |||| || || | ||| || ||| | | || || || | Sbjct 918180 TCCACACGCTTCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGG 918239 Query 146006 CAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCA 146064 ||||| || ||| | || | || | ||| | ||| || || ||||| Sbjct 918240 ACCTCCTCCTTGCCTTGGTTCTTCCGCAGGTCGAGGA-ACTCAAAGACATCGGCATGCCA 918298 Query 146065 CGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACG 146121 ||| || | |||| | || || || || ||||||||||| ||||||| || Sbjct 918299 CGGCTCCAAGTAGATGCAGAATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCG 918358 Query 146122 TACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGA 146181 || ||||||| ||||| || | |||||| || |||| ||| | |||||| || Sbjct 918359 GGCCGTGTTGTTGAAGACACGAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCC 918418 Query 146182 GTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGT 146240 | || | |||| | || | || ||| ||||||| |||| || || ||||| Sbjct 918419 GGCAATGTAAGAGCCGGTAGCACGAATGCGATGGACATTCAGACCGATGCCACCAGCCGT 918478 Query 146241 ACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GC 146297 |||||| || ||| || ||| |||||| ||||||||||| ||||||||||| | Sbjct 918479 -CTTGGAGATCATGGCACACGTC-TTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCC 918536 Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACA 146357 ||| ||| | | || ||||| ||| ||| ||| ||| ||||| || || ||| | Sbjct 918537 TTC--ATGTCTACGAGGAAGCAGGAGGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAAA 918594 Query 146358 ACGTCGGGCTCGCGTGCGTAAA 146379 |||||| || |||||||| Sbjct 918595 GCGTCGGCGAGGCATGCGTAAA 918616 >seq22 Length=1908885 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| | || | ||| |||||||| || |||||||| ||| Sbjct 663115 CCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 663174 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| | ||||||||| || |||| | ||||||||||| || ||| Sbjct 663175 AGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 663234 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | ||||||| ||||||| Sbjct 663235 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGACC 663294 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | ||| || ||||| || || || ||||| |||||||||| Sbjct 663295 TCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATGA 663343 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| || || | ||||||||||| || |||||||| || | Sbjct 662659 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAC 662718 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| ||| | || | ||||||||||| |||||| Sbjct 662719 AGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 662778 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | || | || || | ||||| | Sbjct 662779 ATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAACT 662838 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||| || || || || || || ||||| Sbjct 662839 TCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||||||| | || | || |||||| || |||||||| ||| Sbjct 1644184 GCCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGA 1644125 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || ||||| ||||||||||||||| |||| | ||||||||||| || || Sbjct 1644124 CAGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGG 1644065 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | || | ||| |||| ||||| | Sbjct 1644064 AATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGACTCCAC 1644005 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || || || || || || || ||||| ||||||||| Sbjct 1644004 CTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 1643956 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | || | || |||||||| || |||||||| ||| Sbjct 662887 CCACCACGCAGGCGGAGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 662946 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 662947 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 663006 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || |||| ||||||| Sbjct 663007 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACC 663066 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || ||||| || || || || || || ||||| Sbjct 663067 TCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 663113 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||||||| | || | ||||||||||| ||||||||||| || Sbjct 662430 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGA 662489 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || | ||||||||| ||| | || | ||||||||||| || || Sbjct 662490 CAGCGTCCGGCCATCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGG 662549 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || ||| ||||| | || | || || | || || | Sbjct 662550 AATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATTGTGTCCGAAGATTCCAC 662609 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || ||||| || || || || |||||||||||||| Sbjct 662610 TTCCAGCGTAATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657 >seq11 Length=5116797 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||| |||||||| || |||||||| ||| | Sbjct 2814746 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2814805 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| || |||| | |||||||||||| || ||| Sbjct 2814806 AGCGTCCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 2814865 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | |||||||| Sbjct 2814866 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCCGAGGACTCGACC 2814925 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 |||| ||| | ||| || || || || || || |||||| Sbjct 2814926 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 2814964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012546293120