Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq38 140 2e-28
seq11 109 4e-19
seq22 87.8 1e-12
>seq38
Length=4042462
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 479515 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 479456
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 479455 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 479421
>seq11
Length=5116797
Score = 109 bits (120), Expect = 4e-19
Identities = 203/295 (69%), Gaps = 6/295 (2%)
Strand=Plus/Plus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
|||| |||||||||||||| ||| ||| ||| ||||| |||| || ||||| |||
Sbjct 2432533 GACGTCTTCTACCGCTACAAGATGGAGCGGATCCAGACCAAGATCGAAGGCAAGGGTAAC 2432592
Query 6255 GGTATTAAAACCGTCATTGTCAACATGC-CTGAAG--TCGCTAAGGCGCTCGGACGCCCT 6311
||||| || ||||| ||||| || | | | || | || || | || | |||||
Sbjct 2432593 GGTATCAAGACCGT---TGTCACCAACCTCAGCAGCGTTGCCCAGTCCCTGGCCCGCCCC 2432649
Query 6312 GCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCAC 6371
| |||| | | || || || || | ||| || ||||||||||| | |||| |
Sbjct 2432650 GGAGCCTATCTTATCAAGTACTTTGGCTTCGAGCTCGGCGCTCAGACCAACATTGACCCG 2432709
Query 6372 AAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTT 6431
|||| |||| ||| | ||||| | || | |||||||||| ||||||| ||
Sbjct 2432710 CCCGACGACCGCTGGATCATCAACGGCGCCCACGAGGCTGCCAAGCTCCAGGACTATCTC 2432769
Query 6432 GACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486
||||| || || |||||||||||| || | | ||| | ||||| |||||||
Sbjct 2432770 GACGGTTTCATCTCCAAGTTTGTGCTTTGCAAGAAGTGCAAGAACCCCGAGACCG 2432824
>seq22
Length=1908885
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/221 (69%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||| ||||| || || ||||||||||| || || ||||| || |||| || |
Sbjct 1644171 CGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCA 1644112
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || || || || || || ||||| || || || | ||| | ||| || |||
Sbjct 1644111 TCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 1644052
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTAA 38280
||| || || ||| ||||| | || ||| || | || || || || | || |
Sbjct 1644051 TCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGAC--TCCACCTCAAGGGTGA 1643994
Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
|||| || ||||||| ||| || ||||| ||||||||| ||
Sbjct 1643993 TAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGTT 1643953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947024466733
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |