Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq38 140 2e-28 seq11 109 4e-19 seq22 87.8 1e-12 >seq38 Length=4042462 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 479515 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 479456 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 479455 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 479421 >seq11 Length=5116797 Score = 109 bits (120), Expect = 4e-19 Identities = 203/295 (69%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 |||| |||||||||||||| ||| ||| ||| ||||| |||| || ||||| ||| Sbjct 2432533 GACGTCTTCTACCGCTACAAGATGGAGCGGATCCAGACCAAGATCGAAGGCAAGGGTAAC 2432592 Query 6255 GGTATTAAAACCGTCATTGTCAACATGC-CTGAAG--TCGCTAAGGCGCTCGGACGCCCT 6311 ||||| || ||||| ||||| || | | | || | || || | || | ||||| Sbjct 2432593 GGTATCAAGACCGT---TGTCACCAACCTCAGCAGCGTTGCCCAGTCCCTGGCCCGCCCC 2432649 Query 6312 GCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCAC 6371 | |||| | | || || || || | ||| || ||||||||||| | |||| | Sbjct 2432650 GGAGCCTATCTTATCAAGTACTTTGGCTTCGAGCTCGGCGCTCAGACCAACATTGACCCG 2432709 Query 6372 AAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTT 6431 |||| |||| ||| | ||||| | || | |||||||||| ||||||| || Sbjct 2432710 CCCGACGACCGCTGGATCATCAACGGCGCCCACGAGGCTGCCAAGCTCCAGGACTATCTC 2432769 Query 6432 GACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 ||||| || || |||||||||||| || | | ||| | ||||| ||||||| Sbjct 2432770 GACGGTTTCATCTCCAAGTTTGTGCTTTGCAAGAAGTGCAAGAACCCCGAGACCG 2432824 >seq22 Length=1908885 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||| ||||| || || ||||||||||| || || ||||| || |||| || | Sbjct 1644171 CGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCA 1644112 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | || || || || || || ||||| || || || | ||| | ||| || ||| Sbjct 1644111 TCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 1644052 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTAA 38280 ||| || || ||| ||||| | || ||| || | || || || || | || | Sbjct 1644051 TCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGAC--TCCACCTCAAGGGTGA 1643994 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| || ||||||| ||| || ||||| ||||||||| || Sbjct 1643993 TAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGTT 1643953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947024466733