Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq43 87.8 2e-12 seq41 87.8 2e-12 >seq43 Length=799317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 15050 CCCG-AGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGAT 15108 |||| ||||||||||||||||| |||| | | || ||||| ||| || | | Sbjct 314706 CCCGCAGATTGGCGACAAGTTTGCCTCTCGACACGGACAGAAGGGTACGATTGGTGTAAC 314647 Query 15109 TTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAA 15168 | || ||| |||||||| ||||| | | ||||| |||||||||||||||||||| Sbjct 314646 GTACCGGTCGGAGGACATGCCGTTTACGGTGGAGGGCATTACGCCCGACATTATCATCAA 314587 Query 15169 CCCCAACTGCATCCCGTCCCGCATGACCAT 15198 ||| || ||| ||||| || |||||||| Sbjct 314586 CCCGCACGCCATTCCGTCTCGTATGACCAT 314557 >seq41 Length=3900177 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 15050 CCCGAGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCA-CGTGCGGCATGAT 15108 |||||||||||||||||||| | ||| | | |||||||| |||| ||||| || Sbjct 774652 CCCGAGATTGGCGACAAGTTCTCGTCTCGACACGGTCAAAAGGGTGTCGTG-GGCATCAT 774594 Query 15109 TTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAA 15168 | || ||||| || ||||||||| ||| |||| | ||||||||| ||||| || Sbjct 774593 TGTCGAGCAGGAGGATATGCCCTTTTCCGATACAGGACTCGTGCCCGACATCATCATGAA 774534 Query 15169 CCCCAACTGCATCCCGTCCCGCATGAC 15195 ||| | | |||||||||||||||| Sbjct 774533 CCCGCATGGTTTCCCGTCCCGCATGAC 774507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611391671376800