Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_008187.1
Length=191100
Score E
Sequences producing significant alignments: (Bits) Value
seq43 87.8 2e-12
seq41 87.8 2e-12
>seq43
Length=799317
Score = 87.8 bits (96), Expect = 2e-12
Identities = 110/150 (73%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 15050 CCCG-AGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGAT 15108
|||| ||||||||||||||||| |||| | | || ||||| ||| || | |
Sbjct 314706 CCCGCAGATTGGCGACAAGTTTGCCTCTCGACACGGACAGAAGGGTACGATTGGTGTAAC 314647
Query 15109 TTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAA 15168
| || ||| |||||||| ||||| | | ||||| ||||||||||||||||||||
Sbjct 314646 GTACCGGTCGGAGGACATGCCGTTTACGGTGGAGGGCATTACGCCCGACATTATCATCAA 314587
Query 15169 CCCCAACTGCATCCCGTCCCGCATGACCAT 15198
||| || ||| ||||| || ||||||||
Sbjct 314586 CCCGCACGCCATTCCGTCTCGTATGACCAT 314557
>seq41
Length=3900177
Score = 87.8 bits (96), Expect = 2e-12
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 15050 CCCGAGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCA-CGTGCGGCATGAT 15108
|||||||||||||||||||| | ||| | | |||||||| |||| ||||| ||
Sbjct 774652 CCCGAGATTGGCGACAAGTTCTCGTCTCGACACGGTCAAAAGGGTGTCGTG-GGCATCAT 774594
Query 15109 TTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAA 15168
| || ||||| || ||||||||| ||| |||| | ||||||||| ||||| ||
Sbjct 774593 TGTCGAGCAGGAGGATATGCCCTTTTCCGATACAGGACTCGTGCCCGACATCATCATGAA 774534
Query 15169 CCCCAACTGCATCCCGTCCCGCATGAC 15195
||| | | ||||||||||||||||
Sbjct 774533 CCCGCATGGTTTCCCGTCCCGCATGAC 774507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611391671376800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |