Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq41 152 7e-32 >seq41 Length=3900177 Score = 152 bits (168), Expect = 7e-32 Identities = 462/698 (66%), Gaps = 28/698 (4%) Strand=Plus/Plus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| || | ||||| | || ||||||| || |||||| |||| | || ||| || | Sbjct 918130 CCAGGCCGGCGCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCT 918189 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| || || || || ||||| || || | || ||||| | || | ||||| | Sbjct 918190 TCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCT 918249 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | ||| ||||| || ||||||||| | | | ||| | ||||||||| ||||||| Sbjct 918250 TGCCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGT 918309 Query 63198 ATATGGCCATAA--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63255 | ||| || || | || ||||| ||||| || |||||||| | ||| | || ||||| Sbjct 918310 AGATG--CAGAATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTT 918367 Query 63256 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315 || | || | | ||| || || || || |||||||| || || || || | || || Sbjct 918368 GTTGAAGACACGAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTA 918427 Query 63316 GCTTCCACTGGCACGAAT---ATT-ACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63371 || | |||||||| || || ||| | |||| || || || ||| | || | Sbjct 918428 AGAGCCGGTAGCACGAATGCGATGGAC--ATTCA--GACCGATGCCACCAGCCGTCTTGG 918483 Query 63372 AGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATG 63430 |||| | || || ||| || | ||| || ||||||||||| || ||||||||| ||||| Sbjct 918484 AGATCATGGCACA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATG 918542 Query 63431 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGT 63486 | | || || ||| |||| | ||| | || || || || || || | || Sbjct 918543 TCTACGAGGAAGCAGGAGGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAAAGCGT 918598 Query 63487 AGGAGAAGCGTGAGTAAACCA-TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63545 || || || || ||||| | || ||| | |||| ||||| ||||| | | | | Sbjct 918599 CGGCGAGGCATGCGTAAAGAACTTGTTCGACATGTAG-TTGTATGTCTCGACAACACGCT 918657 Query 63546 CTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 | | || ||| | || || || || || ||||| | ||||||||| || | || Sbjct 918658 CCACAT--CATCGCCCCAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTC 918715 Query 63604 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63663 |||||||| | | || | | |||||| |||| || || || ||||| || Sbjct 918716 GACGATCTTACCATCGAGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTA 918775 Query 63664 GTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 | ||| ||||| || ||||| | ||| |||||| Sbjct 918776 TTGGTAGTTGAAGTCCCGGTCGTAGACAATGGCCGAGT 918813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631659422800