Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq41 152 7e-32
>seq41
Length=3900177
Score = 152 bits (168), Expect = 7e-32
Identities = 462/698 (66%), Gaps = 28/698 (4%)
Strand=Plus/Plus
Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077
|||| || | ||||| | || ||||||| || |||||| |||| | || ||| || |
Sbjct 918130 CCAGGCCGGCGCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCT 918189
Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137
|||| || || || || ||||| || || | || ||||| | || | ||||| |
Sbjct 918190 TCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCT 918249
Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197
| ||| ||||| || ||||||||| | | | ||| | ||||||||| |||||||
Sbjct 918250 TGCCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGT 918309
Query 63198 ATATGGCCATAA--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63255
| ||| || || | || ||||| ||||| || |||||||| | ||| | || |||||
Sbjct 918310 AGATG--CAGAATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTT 918367
Query 63256 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315
|| | || | | ||| || || || || |||||||| || || || || | || ||
Sbjct 918368 GTTGAAGACACGAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTA 918427
Query 63316 GCTTCCACTGGCACGAAT---ATT-ACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63371
|| | |||||||| || || ||| | |||| || || || ||| | || |
Sbjct 918428 AGAGCCGGTAGCACGAATGCGATGGAC--ATTCA--GACCGATGCCACCAGCCGTCTTGG 918483
Query 63372 AGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATG 63430
|||| | || || ||| || | ||| || ||||||||||| || ||||||||| |||||
Sbjct 918484 AGATCATGGCACA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATG 918542
Query 63431 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGT 63486
| | || || ||| |||| | ||| | || || || || || || | ||
Sbjct 918543 TCTACGAGGAAGCAGGAGGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAAAGCGT 918598
Query 63487 AGGAGAAGCGTGAGTAAACCA-TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63545
|| || || || ||||| | || ||| | |||| ||||| ||||| | | | |
Sbjct 918599 CGGCGAGGCATGCGTAAAGAACTTGTTCGACATGTAG-TTGTATGTCTCGACAACACGCT 918657
Query 63546 CTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603
| | || ||| | || || || || || ||||| | ||||||||| || | ||
Sbjct 918658 CCACAT--CATCGCCCCAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTC 918715
Query 63604 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63663
|||||||| | | || | | |||||| |||| || || || ||||| ||
Sbjct 918716 GACGATCTTACCATCGAGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTA 918775
Query 63664 GTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701
| ||| ||||| || ||||| | ||| ||||||
Sbjct 918776 TTGGTAGTTGAAGTCCCGGTCGTAGACAATGGCCGAGT 918813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631659422800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |