Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq22 96.9 3e-15
>seq22
Length=1908885
Score = 96.9 bits (106), Expect = 3e-15
Identities = 157/224 (70%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
||| ||||| || || || ||||| |||| || || | ||||| | || ||||||||
Sbjct 1643953 AACCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTC 1644012
Query 25055 GTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
||| ||||||||||| || || ||| || ||| ||||| || || ||||| ||
Sbjct 1644013 GTCCGACACTATCGA--CAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCA 1644070
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
||||| ||||| | || || || ||||| || | || |||| || || || |||
Sbjct 1644071 GACCAGCAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGAC 1644130
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
||||| || || || || |||||| || | ||||| ||||
Sbjct 1644131 TACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGGCT 1644174
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| | ||||| || | || || | ||||| |||||||||
Sbjct 662885 ATGCAAATCTTTGTCAAGACACTCACCGGCAAGACGATTACGTTGGAAGTTGAGTCGTCT 662826
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| || || || || || |||||
Sbjct 662825 GACACAATCGACAACGTAAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAG 662766
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | ||||| || ||||| || | || || | || || || || |||||
Sbjct 662765 CAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGGACACTGTCTGACTACAAC 662706
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || ||||| || || |||||
Sbjct 662705 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 662674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327772909045
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |