Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq22 118 9e-22 seq11 95.1 1e-14 >seq22 Length=1908885 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || || ||||||| || || || | || Sbjct 663113 ATGCAAATCTTTGTCAAGACACTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 663054 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| ||||||||||| || || || || || Sbjct 663053 GACACGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 662994 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| ||||||| | ||||| |||||| Sbjct 662993 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAAC 662934 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | ||| | || |||| || ||| Sbjct 662933 ATCCAGAAGGAGTCTACTCTCCACCTGGTTCTCCGCCTGCGTGGTGGT 662886 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| ||||| || || | || Sbjct 663341 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCC 663282 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || ||||| ||||||||||| || || || || || Sbjct 663281 GATACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 663222 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||||| ||||| |||||| ||||||| |||||| Sbjct 663221 CAGCGCCTGATCTTTGCTGGCAAGCAGTTGGAGGACGGTCGCACCCTCTCCGACTACAAC 663162 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 663161 ATCCAGAAGGAGTCCACC 663144 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || ||||| ||| | || || ||||||||| | | Sbjct 662657 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACGCTGGAAGTGGAATCTTCG 662598 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| ||||||||||| ||||| || || || Sbjct 662597 GACACAATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAG 662538 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||||| || ||| ||| || | || || |||||| Sbjct 662537 CAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGGACGCTGTCGGACTACAAC 662478 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 662477 ATTCAGAAGGAGTCGAC 662461 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| ||||| | || Sbjct 1643957 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 1644016 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || ||||||||||| ||||| || || || Sbjct 1644017 GACACTATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 1644076 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | |||||| ||| ||| | ||||| |||||| Sbjct 1644077 CAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGACTACAAC 1644136 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 1644137 ATCCAGAAGGA 1644147 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || ||| | || | ||||| || | | Sbjct 662885 ATGCAAATCTTTGTCAAGACACTCACCGGCAAGACGATTACGTTGGAAGTTGAGTCGTCT 662826 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || ||||||||||||||||| || ||||| || Sbjct 662825 GACACAATCGACAACGTAAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAG 662766 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||| || | || || |||||| Sbjct 662765 CAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGGACACTGTCTGACTACAAC 662706 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || || |||| |||| || ||| Sbjct 662705 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGT 662658 >seq11 Length=5116797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| || || || || || | || ||| | Sbjct 2814964 TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 2814905 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| || || || || || || ||||| Sbjct 2814904 CGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCT 2814845 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || ||||| ||||| ||| | |||||| ||| || | ||||| |||||||| || || Sbjct 2814844 GATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAGAA 2814785 Query 22407 AGAATCCACC 22416 || |||||| Sbjct 2814784 GGAGTCCACC 2814775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727780036295