Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq11 116 8e-21
seq41 100 6e-16
seq1 89.7 1e-12
seq6 86.0 1e-11
>seq11
Length=5116797
Score = 116 bits (128), Expect = 8e-21
Identities = 150/203 (74%), Gaps = 8/203 (4%)
Strand=Plus/Minus
Query 280156 TGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAG 280215
||||||| || |||| |||||||| ||||| ||||| || ||||| || || |||| |
Sbjct 3102509 TGAACTCGCGTATTGCCGTCATTGGCCCCAACGGTGCTGGCAAGTCCACGCTGGTCAACG 3102450
Query 280216 TCCTGACTGGCGAG---ACCCAGGCCACTGAGGGGTCCGTT-TGGAAGCATCCCAACATG 280271
||||||| |||||| | || |||||| | ||| | | | |||| ||||||
Sbjct 3102449 TCCTGACGGGCGAGCTGATCC---CCACTG-GTGGTGAGATCTACCAGCACGAGAACATG 3102394
Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331
|| || || ||| || ||||||||||| ||||||||| ||||||||||||| |||
Sbjct 3102393 CGTATTGCCTACATCAAGCAGCACGCTTTTGCCCACATCGATAACCACCTGGACAAGACC 3102334
Query 280332 CCTAACCAATACATTCAGTGGCG 280354
|| | | ||||| ||||||||
Sbjct 3102333 CCGTCCGAGTACATCCAGTGGCG 3102311
Score = 89.7 bits (98), Expect = 1e-12
Identities = 172/251 (69%), Gaps = 2/251 (1%)
Strand=Plus/Minus
Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375
||| ||||| ||| |||| ||| || ||||| ||||| |||| |||||||
Sbjct 3103349 AGGCCGAAGTCGAGGAGGACGAGGAGGAGGGCGAGGACCTGTGCAACTGCACCTTCTCGC 3103290
Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435
|||| || |||| ||||| ||||| ||| ||| |||| | ||||| ||| | |
Sbjct 3103289 TCGCCTACGGTGCCAAGATCCTGCTCAACCAGACCAGCCTGCGTCTGAAGCGCGGCCAGC 3103230
Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495
| || ||||| ||| ||||| || |||| ||| || || ||||||||||| |
Sbjct 3103229 GCTACGGTCTGTGCGGCCCCAACGGTTCGGGCAAGTCTACGCTCATGCGCGCCATCAACA 3103170
Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554
||| ||| | || || || || || ||| ||||| | ||| || | || ||||||
Sbjct 3103169 ACGAGCAGGTTGAGGGCTTCCCCAA-GCAGAGCGAGGTCAAGACCGTCTTCGTCGAGCAC 3103111
Query 279555 GACATCGACTC 279565
||| | |||||
Sbjct 3103110 GACCTGGACTC 3103100
Score = 84.2 bits (92), Expect = 4e-11
Identities = 112/153 (73%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 280671 ACCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGA 280730
||||| | || || ||| ||||| | | | ||||| ||||| |||||||| || ||
Sbjct 3101949 ACCAACTTCGGCCTCGACGCCGAGCTGATTTCCCACTCGCGCATGCGCGGTCTGTCGGGT 3101890
Query 280731 GGCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGT 280789
|| ||| ||||| |||| | | || |||| |||||| | || || |||| ||
Sbjct 3101889 GGTCAGCGTGTCAAGGTTGTGCTGGCTGCCTGCTC-GTGGCAGCGGCCCCATTTGATTGT 3101831
Query 280790 TCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
||||||||||| |||||||| |||||||||||
Sbjct 3101830 GCTCGACGAGCCCACCAACTACCTGGACCGCGA 3101798
>seq41
Length=3900177
Score = 100 bits (110), Expect = 6e-16
Identities = 453/706 (64%), Gaps = 29/706 (4%)
Strand=Plus/Plus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGA---GGTCAATCACTGTCTTCAT 293171
||||| ||| |||| |||||||||||| || ||||| | | ||||| ||| |
Sbjct 917087 CTGCGACTGGTCGATAAAGGCACCACGGTCCGCAGCCATCTGCACAATC---GTCCGCTG 917143
Query 293172 AGAGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTT 293231
||||||||||||| |||||||||| ||||||| || | | ||| || ||
Sbjct 917144 AGAGATCTCCCACACCGTCTTGTACAGAGCCTTGATGTCTGCCGGGATGTTGGGAATGTT 917203
Query 293232 CTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCAC 293290
|||||| || || | |||||| || |||||||||| | || ||||| || ||||
Sbjct 917204 CTGGATCGAACCGTTCTCGGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCAT 917263
Query 293291 GAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGC 293350
| | | || || || || | | |||||| || |||||||||| || || |
Sbjct 917264 G-TCGACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCACCGGCCAGCACAC 917322
Query 293351 GACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAG 293410
| || ||||||||| || ||| || ||| ||| || |||||| |
Sbjct 917323 GCCGCGAGTAAATGTTGGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTG 917382
Query 293411 CAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGA 293467
|| || || || ||||| | || | |||| ||| | |||||| || |||||
Sbjct 917383 ACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGA 917442
Query 293468 ----CACGCGATTCGAGACCCGCCCAGTCCAGAGCAGTCTGA-GGTGTAACACCCCAGAG 293522
|| || |||| | || | ||| || ||| || || || ||| |||| |
Sbjct 917443 TCTTCAGCCGCAGCGAGTC---CCAATCCCACAG--GTCCGATGGCGTGACATCCCACAT 917497
Query 293523 ATGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATG 293582
| ||||| ||||||| |||||||||||||| | || | | || |||
Sbjct 917498 GTCGGGCTGCAGAATACCCTGCGACACAGGAGACCCCTCATATGTCTGGTAGGTGCC--- 917554
Query 293583 CTCA---TCAGAGAGCTCGCAAGA-TGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGA 293638
|||| | | |||||||| || | | ||| | || || ||| ||| ||| ||||
Sbjct 917555 CTCAATCTTGGCCAGCTCGCACGACTCCGTCAGC-GCCGCGTGGTAGATGGTCTCAAAGA 917613
Query 293639 TCTCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACA 293698
|| ||| ||| ||| |||| ||| ||||| ||||| |||| | |||
Sbjct 917614 CCTGCTTGTTCAGCAGGCGTGCCTCGGGAGACTCAAAGGGCATGCGCAGCGCCAGGAAGG 917673
Query 293699 CATCCTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTG 293758
| ||| ||||||||| ||||| | ||||| ||| || | ||| |||| || || ||
Sbjct 917674 CGTCCGCCAGACCCTGCACACCCAGACCAATGGGACGGTGGCGCATGTTACTGTTCCGTG 917733
Query 293759 CCTCGGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
| || || || | || | ||||||||| | | || ||||||
Sbjct 917734 CTTCTGGCACAGGGTAGTAGTTGACATCAATGATGCGGTTCAGGTT 917779
>seq1
Length=1786981
Score = 89.7 bits (98), Expect = 1e-12
Identities = 134/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233
||||||||||||| ||||| || ||||| || || ||||| | ||||| ||||| |
Sbjct 520624 TCATTGGACCCAACGGTGCCGGCAAGTCGACGCTGATCAAGCTGCTGACGGGCGA-AGTG 520682
Query 280234 AGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292
| || ||| || | | | |||||| ||||| ||||||| | ||| | |||
Sbjct 520683 ATTCCGTCGAGCGGCAAGGTGGAGAAGCACCCCAATCTGCGGATCGGCTACATTAAGCAG 520742
Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352
||||| || | ||| |||||| |||||||| | ||| || ||||| || | || |||
Sbjct 520743 CACGCCTTGGAGCACGTCGAGATGCACCTGGAGAAGACGCCCAACCAGTATCTGCAATGG 520802
Query 280353 CGCTATGC 280360
|| |||||
Sbjct 520803 CGGTATGC 520810
>seq6
Length=214638
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 43785 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 43844
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 43845 CCCGCATCGGGC 43856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836233726163
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |