Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq11 116 8e-21 seq41 100 6e-16 seq1 89.7 1e-12 seq6 86.0 1e-11 >seq11 Length=5116797 Score = 116 bits (128), Expect = 8e-21 Identities = 150/203 (74%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 280156 TGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAG 280215 ||||||| || |||| |||||||| ||||| ||||| || ||||| || || |||| | Sbjct 3102509 TGAACTCGCGTATTGCCGTCATTGGCCCCAACGGTGCTGGCAAGTCCACGCTGGTCAACG 3102450 Query 280216 TCCTGACTGGCGAG---ACCCAGGCCACTGAGGGGTCCGTT-TGGAAGCATCCCAACATG 280271 ||||||| |||||| | || |||||| | ||| | | | |||| |||||| Sbjct 3102449 TCCTGACGGGCGAGCTGATCC---CCACTG-GTGGTGAGATCTACCAGCACGAGAACATG 3102394 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| || ||||||||||| ||||||||| ||||||||||||| ||| Sbjct 3102393 CGTATTGCCTACATCAAGCAGCACGCTTTTGCCCACATCGATAACCACCTGGACAAGACC 3102334 Query 280332 CCTAACCAATACATTCAGTGGCG 280354 || | | ||||| |||||||| Sbjct 3102333 CCGTCCGAGTACATCCAGTGGCG 3102311 Score = 89.7 bits (98), Expect = 1e-12 Identities = 172/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||| ||||| ||| |||| ||| || ||||| ||||| |||| ||||||| Sbjct 3103349 AGGCCGAAGTCGAGGAGGACGAGGAGGAGGGCGAGGACCTGTGCAACTGCACCTTCTCGC 3103290 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 |||| || |||| ||||| ||||| ||| ||| |||| | ||||| ||| | | Sbjct 3103289 TCGCCTACGGTGCCAAGATCCTGCTCAACCAGACCAGCCTGCGTCTGAAGCGCGGCCAGC 3103230 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| ||| ||||| || |||| ||| || || ||||||||||| | Sbjct 3103229 GCTACGGTCTGTGCGGCCCCAACGGTTCGGGCAAGTCTACGCTCATGCGCGCCATCAACA 3103170 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | || || || || || ||| ||||| | ||| || | || |||||| Sbjct 3103169 ACGAGCAGGTTGAGGGCTTCCCCAA-GCAGAGCGAGGTCAAGACCGTCTTCGTCGAGCAC 3103111 Query 279555 GACATCGACTC 279565 ||| | ||||| Sbjct 3103110 GACCTGGACTC 3103100 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 280671 ACCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGA 280730 ||||| | || || ||| ||||| | | | ||||| ||||| |||||||| || || Sbjct 3101949 ACCAACTTCGGCCTCGACGCCGAGCTGATTTCCCACTCGCGCATGCGCGGTCTGTCGGGT 3101890 Query 280731 GGCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGT 280789 || ||| ||||| |||| | | || |||| |||||| | || || |||| || Sbjct 3101889 GGTCAGCGTGTCAAGGTTGTGCTGGCTGCCTGCTC-GTGGCAGCGGCCCCATTTGATTGT 3101831 Query 280790 TCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||||||||||| |||||||| ||||||||||| Sbjct 3101830 GCTCGACGAGCCCACCAACTACCTGGACCGCGA 3101798 >seq41 Length=3900177 Score = 100 bits (110), Expect = 6e-16 Identities = 453/706 (64%), Gaps = 29/706 (4%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGA---GGTCAATCACTGTCTTCAT 293171 ||||| ||| |||| |||||||||||| || ||||| | | ||||| ||| | Sbjct 917087 CTGCGACTGGTCGATAAAGGCACCACGGTCCGCAGCCATCTGCACAATC---GTCCGCTG 917143 Query 293172 AGAGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTT 293231 ||||||||||||| |||||||||| ||||||| || | | ||| || || Sbjct 917144 AGAGATCTCCCACACCGTCTTGTACAGAGCCTTGATGTCTGCCGGGATGTTGGGAATGTT 917203 Query 293232 CTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCAC 293290 |||||| || || | |||||| || |||||||||| | || ||||| || |||| Sbjct 917204 CTGGATCGAACCGTTCTCGGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCAT 917263 Query 293291 GAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGC 293350 | | | || || || || | | |||||| || |||||||||| || || | Sbjct 917264 G-TCGACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCACCGGCCAGCACAC 917322 Query 293351 GACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAG 293410 | || ||||||||| || ||| || ||| ||| || |||||| | Sbjct 917323 GCCGCGAGTAAATGTTGGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTG 917382 Query 293411 CAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGA 293467 || || || || ||||| | || | |||| ||| | |||||| || ||||| Sbjct 917383 ACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGA 917442 Query 293468 ----CACGCGATTCGAGACCCGCCCAGTCCAGAGCAGTCTGA-GGTGTAACACCCCAGAG 293522 || || |||| | || | ||| || ||| || || || ||| |||| | Sbjct 917443 TCTTCAGCCGCAGCGAGTC---CCAATCCCACAG--GTCCGATGGCGTGACATCCCACAT 917497 Query 293523 ATGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATG 293582 | ||||| ||||||| |||||||||||||| | || | | || ||| Sbjct 917498 GTCGGGCTGCAGAATACCCTGCGACACAGGAGACCCCTCATATGTCTGGTAGGTGCC--- 917554 Query 293583 CTCA---TCAGAGAGCTCGCAAGA-TGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGA 293638 |||| | | |||||||| || | | ||| | || || ||| ||| ||| |||| Sbjct 917555 CTCAATCTTGGCCAGCTCGCACGACTCCGTCAGC-GCCGCGTGGTAGATGGTCTCAAAGA 917613 Query 293639 TCTCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACA 293698 || ||| ||| ||| |||| ||| ||||| ||||| |||| | ||| Sbjct 917614 CCTGCTTGTTCAGCAGGCGTGCCTCGGGAGACTCAAAGGGCATGCGCAGCGCCAGGAAGG 917673 Query 293699 CATCCTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTG 293758 | ||| ||||||||| ||||| | ||||| ||| || | ||| |||| || || || Sbjct 917674 CGTCCGCCAGACCCTGCACACCCAGACCAATGGGACGGTGGCGCATGTTACTGTTCCGTG 917733 Query 293759 CCTCGGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 | || || || | || | ||||||||| | | || |||||| Sbjct 917734 CTTCTGGCACAGGGTAGTAGTTGACATCAATGATGCGGTTCAGGTT 917779 >seq1 Length=1786981 Score = 89.7 bits (98), Expect = 1e-12 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||||||||| ||||| || ||||| || || ||||| | ||||| ||||| | Sbjct 520624 TCATTGGACCCAACGGTGCCGGCAAGTCGACGCTGATCAAGCTGCTGACGGGCGA-AGTG 520682 Query 280234 AGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 | || ||| || | | | |||||| ||||| ||||||| | ||| | ||| Sbjct 520683 ATTCCGTCGAGCGGCAAGGTGGAGAAGCACCCCAATCTGCGGATCGGCTACATTAAGCAG 520742 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 ||||| || | ||| |||||| |||||||| | ||| || ||||| || | || ||| Sbjct 520743 CACGCCTTGGAGCACGTCGAGATGCACCTGGAGAAGACGCCCAACCAGTATCTGCAATGG 520802 Query 280353 CGCTATGC 280360 || ||||| Sbjct 520803 CGGTATGC 520810 >seq6 Length=214638 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 43785 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 43844 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 43845 CCCGCATCGGGC 43856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836233726163