Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq41 480 2e-130 seq42 233 4e-56 >seq41 Length=3900177 Score = 480 bits (532), Expect = 2e-130 Identities = 1248/1875 (67%), Gaps = 73/1875 (4%) Strand=Plus/Plus Query 243741 TGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGT 243799 ||||||||| ||| || | |||| |||| || | ||||||||||||||| ||||| || Sbjct 916954 TGAACTGGATCGGCTGTG-CGGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGG 917012 Query 243800 CCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCG 243859 || |||| | || ||||||| ||| | ||| ||| ||||| Sbjct 917013 CCCAGCTTCCAGCCCGTGAAGTGCATGCTCGTGATCTTGCCCAT-----------GGTCG 917061 Query 243860 TCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCG 243919 | || | || || ||| || ||||| |||||||| |||| | || || || Sbjct 917062 GC-TCACGCATGTGGATGTTCAGCGACTGCGACTGGTCGATAAAGGCACCACGGTCCGCA 917120 Query 243920 GCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAG 243978 ||||| | | |||| |||||| ||||| || |||||||||| | | ||||| Sbjct 917121 GCCATCTGCACAATCGTCCG-CTGAGAGATCTCCCACACCGTCTTGTACAGAGCCTTGAT 917179 Query 243979 GTGCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036 || | |||| || | |||||||| | ||| || || | | | |||| || | Sbjct 917180 GTCTGCCGGGATG--TTGGGAATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTC 917237 Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACC 244096 |||||| || |||||| |||| | |||| ||| || ||| | ||| ||| Sbjct 917238 TTCATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACC 917297 Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| ||||| || | |||||| || ||| ||| | |||| || |||||||| | Sbjct 917298 ACCTGGAACTCACCGGCCAGCACACGCCGCGAGTAAATGTTGGATGTGTACGGCTCGAAG 917357 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 | ||| |||||||||| ||||| | ||| ||| |||||||| |||| |||||||||| Sbjct 917358 CACTCGTTGTTGCCCAGAATCTGTGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGA 917417 Query 244217 CTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCC 244276 ||||| | ||| |||||| || ||| || | ||| || ||| ||||||| | || Sbjct 917418 CTGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAATCCCACAGGTCC 917477 Query 244277 GAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGG 244336 || | |||| || |||||||||| |||||| | |||| || || Sbjct 917478 GA-------TGGCGT--GACATCCCACATGTCGGGCTGCAGAATACCCTGCGACACAGGA 917528 Query 244337 CTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC-GTCGAG 244395 ||||| || ||| |||||| || || || |||||||| || ||| ||| || Sbjct 917529 GACCCCTCATATGTCTGGTAGGTGCCCTCAATCTTGGCCAGCTCGCACGACTCCGTC-AG 917587 Query 244396 GGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT 244455 || |||| |||||||||||| |||| | |||||||| ||| |||| | | Sbjct 917588 CGCCGCGTGGTAGATGGTCTCAAAGACCTGCTTGTTCAGCAGGCGTGCCTCGGGAGACTC 917647 Query 244456 GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGG 244515 ||||| |||| || | || |||| |||| ||||| |||||||| || | || ||||| Sbjct 917648 AAAGGGCATGCGCAGCGCCAGGAAGGCGTCCGCCAGACCCTGCACACCCAGACCAATGGG 917707 Query 244516 TCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCAC 244575 | ||| ||| |||| | | ||||| ||||| ||||| ||||| | || || | Sbjct 917708 ACGGTGGCGCATGTTACTGTTCCGTGCTTCTGGCACAGGGTAGTAGTTGACATCAATGAT 917767 Query 244576 CTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTAC 244633 ||| ||||||||| | || |||| ||| ||| ||| ||| ||||| ||| Sbjct 917768 GCGGTTCAGGTTGCGGACAACCAGCTGCGT--GACATCGTGCAGTCTCTGGAAGTCATAC 917825 Query 244634 TCGTAGGGATCCTCGGCGATGGTGATCCTC-AC-AAACTCGTTGAGGGCGACGCTGGCCA 244691 || |||| | || || || || ||| || || || | ||||| Sbjct 917826 -------GA--CTCG----TTGTTATAGTCGACGAAAGACGGA-AGAGCCAAAGAGGCCA 917871 Query 244692 GGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTAC 244751 |||||| || |||||||| |||| | ||||| ||||||||| ||||| | ||| Sbjct 917872 AGTTGCACACAGCCACCTCGTCCGGAGCCGAGTACTCGACAATCTCCGTGCACAAGTTCG 917931 Query 244752 TGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGA 244811 || |||||| ||||||| || || ||| |||| ||||||| ||||||||||| Sbjct 917932 AGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGA 917991 Query 244812 GCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAG 244871 |||||||||| || ||||| ||| || | || | | | ||| || | | | Sbjct 917992 GCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCATACCACAGCTTCTGGG 918051 Query 244872 CCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 |||||| | || ||||| | ||||| |||||| |||||| ||||| |||| Sbjct 918052 CCTTGATCTTCTTGCGACCGCGACCCTCGCGCTCGTATTTCTCGTACAGAGCCTCAAACT 918111 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCACTC 244989 | ||| || || | ||||||| ||| || | |||||||| || ||||||| Sbjct 918112 CCTCGCCGTAGCAATCAGCCAGGCCGGCGCATTCGTTG--GGGCACATCAGCGTCCACTC 918169 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 |||| | || || | || |||||| ||||||||||||||||| || |||| || || Sbjct 918170 GCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAAGATC 918229 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | || | ||| ||| ||| |||||||| ||| || | || |||||||| || Sbjct 918230 ACGGGCACGGACCTCCTCCTTGCCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAGACATC 918289 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 | | ||||| ||||||| ||||| || || ||||||||||||||||| ||||| || Sbjct 918290 GGCATGCCACGGCTCCAAGTAGATGCAGAATGCACCGGGCCGCTTGTTGCCACCCTGATC 918349 Query 245170 CAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228 ||| | | || | |||||||| || || | || | |||||||| || || Sbjct 918350 CACGTAGCGGGCCGTG-TTGTTGAAGACACGAAGCATGGGGATGATGCCGTTGGATGTGC 918408 Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCT 245284 |||| ||||| ||||| | ||| | | | | ||| ||||||||| || Sbjct 918409 CGTTAGTGCCGGCAATGTAAGAGCCGGTAGCAC---GAATGC-GATGGACATTCAGACCG 918464 Query 245285 AGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCC 245344 | || || || ||||||||| | ||| || |||||| ||||| |||||||| Sbjct 918465 ATGCCACCAGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTCA 918524 Query 245345 ATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCAC 245404 ||||| || |||||||| | || ||||||||||||||||| | || ||| ||| Sbjct 918525 ATGCTATCATCCTTCATGTCTACGAGGAAGCAGGAGGACAGCTGAGCCTGGGGCGTGCCG 918584 Query 245405 GAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTC 245464 | |||||| || || || ||| || |||||| | | |||| | | | ||| ||| Sbjct 918585 GCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAGAACTTGTTCGACATGTAGTTGTATGTC 918644 Query 245465 TGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTG 245523 | || | | || | | ||||| ||| | ||| ||| | ||| | |||| Sbjct 918645 TCGACAACACGCTCCACATCATCGCCCCAGATACCAACGGC-CACGCGCATAATCATGTG 918703 Query 245524 CTGGGGCGTCT---CGATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGT 245580 ||| ||| || |||| || ||| | |||||| | |||||| ||||| || || Sbjct 918704 CTGCGGCCGCTCGACGATCTTACCATCGAG---CTTGAGGAGGTAGGACCGCTCCAGGGT 918760 Query 245581 CTTGAACCCAAAGTA 245595 |||||| |||||||| Sbjct 918761 CTTGAAGCCAAAGTA 918775 >seq42 Length=705881 Score = 233 bits (258), Expect = 4e-56 Identities = 367/519 (71%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| |||||||| || |||||| | || | || Sbjct 321869 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGCGCTGGATTGCTGACAAGGAGTCCACC 321810 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | || | || || || || | ||||| |||||||| |||||| ||||||||| Sbjct 321809 TTTGCGCAGCGCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGGCGCCTTC 321750 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTCGAACG 42810 | |||||||||||||||||| || ||| | |||||| || || || ||||| || | Sbjct 321749 TCTTCCATCTTCTGGCTCAAGAAGC--GTGGCCTGATGCCTGGTCTGACTTTCTCCAATG 321692 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | || || | | |||||||||||||| | |||||||||||||| |||||||| || Sbjct 321691 AGCTGATTTCCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCTGCTGTTCTC---CC 321635 Query 42871 ACCTCAGGCACAAGCCCTCG---AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGG 42927 |||| | |||| | | || ||| || | ||| || ||| || || || || Sbjct 321634 ACCT---GAACAACCGCCCGAGCAAGCAGATGATCCAGGACATTATTGTCGATGCTGTCA 321578 Query 42928 AGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCAC 42986 |||| ||| |||||||||| ||| || | ||| |||||| | ||| | ||||||||| | Sbjct 321577 AGATTGAGCAGGAGTTCCTGACGGAGGCTCTG-CCGTGTGCTCTGCTGGGCATGAACTCC 321519 Query 42987 GACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC 43046 ||||||| ||||||| ||| || ||||||| ||| ||| | | || | Sbjct 321518 ACCCTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCGCCCTCGGCAAC 321459 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | | ||| | | ||||||||||||||||||||||||||| ||| ||| Sbjct 321458 GACAAGGTGTACCGTTCCACCAACCCCTTCGACTTTATGGAGAACATCTCCCTGGGTGGC 321399 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||| || ||||||||||||| ||||||||| Sbjct 321398 AAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTACCAG 321360 Score = 143 bits (158), Expect = 5e-29 Identities = 236/336 (70%), Gaps = 11/336 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||| || ||| |||||| |||||||||||||| ||| Sbjct 322262 ATCTGGCAGATGTACAAGAAGCACGAGGCTTCCTTCTGGACGGCCGAGGAGATTGATCTG 322203 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAAGTTTTTCCTCAAAA- 42417 |||||||| | || |||| | || | |||| |||| || |||| ||| Sbjct 322202 TCCAAGGACCTGCACGACTGGCACA-ACCGCCTGAACGACGACGAGCGTTTCTTCATCTC 322144 Query 42418 --ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || ||||||||||| |||||||| ||||| ||||| |||||||| | | | Sbjct 322143 CCACATTCTCGCCTTCTTCGCTGCCTCTGATGGCATCGTCAACGAGAACCTCGTCGAGCG 322084 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| |||||| ||||||||||| ||||||||||| || Sbjct 322083 CTTCAGCGCTGAGGTCCAGGTGCCTGAGGCTCGCTGCTTCTATGGCTTCCAGATCATGAT 322024 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| |||| | ||||||| |||| |||||| ||| || Sbjct 322023 GGAGAACATCCACTCGGAGACGTACTC---TCTGCTCATTGACACCTACATCAAGGAGCC 321967 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | ||||| || || ||||| ||||| || || Sbjct 321966 CAAGGAGCGCGACCACCTTTTCAACGCCATTGATAC 321931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338692417680