Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq22 96.9 3e-15 >seq22 Length=1908885 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| |||||||||||||||||| || | | Sbjct 662431 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAC 662490 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||| |||||||| || || |||||||||||||| || ||| Sbjct 662491 AGCGTCCGGCCATCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGA 662550 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 662551 ATGCCCTCCTTGTCCTGAATCTT 662573 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||||||||||||| || ||||||||||||||||| |||||||| || | || || Sbjct 1644174 AGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGG 1644115 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| |||||||| || || |||||||||||||| || || | || ||| Sbjct 1644114 CCATCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCC 1644055 Query 34030 TTGTCC 34035 |||||| Sbjct 1644054 TTGTCC 1644049 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||||| || ||||| ||||||||| |||||||| || | Sbjct 662658 ACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGA 662717 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || | || |||| |||| |||||||| || || |||||||||||||| || || Sbjct 662718 CAGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGG 662777 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||| ||||| || || ||| | | | | |||| || || Sbjct 662778 GATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAAC 662837 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | ||| || || || ||||| ||||| || |||||||||||||| Sbjct 662838 TTCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || | | || Sbjct 663124 AGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGA 663183 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||| |||||||| ||||| |||||||||||||| || ||| | || ||| Sbjct 663184 CCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 663243 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| ||| || ||| | | | |||| | ||| ||| || | || Sbjct 663244 TTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGTG 663303 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || || || || ||||| ||||| Sbjct 663304 ATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062191914486