Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq22 96.9 3e-15
>seq22
Length=1908885
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| ||||||||||| || ||||| |||||||||||||||||| || | |
Sbjct 662431 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAC 662490
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| || | || ||||| |||||||| || || |||||||||||||| || |||
Sbjct 662491 AGCGTCCGGCCATCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGA 662550
Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043
| || ||| |||||| ||| ||
Sbjct 662551 ATGCCCTCCTTGTCCTGAATCTT 662573
Score = 96.9 bits (106), Expect = 3e-15
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|||||||||||||| || ||||||||||||||||| |||||||| || | || ||
Sbjct 1644174 AGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGG 1644115
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
| || |||| |||||||| || || |||||||||||||| || || | || |||
Sbjct 1644114 CCATCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCC 1644055
Query 34030 TTGTCC 34035
||||||
Sbjct 1644054 TTGTCC 1644049
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| |||||||||| || ||||| ||||||||| |||||||| || |
Sbjct 662658 ACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGA 662717
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| | || |||| |||| |||||||| || || |||||||||||||| || ||
Sbjct 662718 CAGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGG 662777
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079
| | ||| ||||| || || ||| | | | | |||| || ||
Sbjct 662778 GATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAAC 662837
Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
||| | ||| || || || ||||| ||||| || ||||||||||||||
Sbjct 662838 TTCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || |||||||| || || ||| ||||||||| |||||||| || | | ||
Sbjct 663124 AGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGA 663183
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
|||| ||||| |||||||| ||||| |||||||||||||| || ||| | || |||
Sbjct 663184 CCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 663243
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089
|||||| ||| || ||| | | | |||| | ||| ||| || | ||
Sbjct 663244 TTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGTG 663303
Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || || ||||| || || || || ||||| |||||
Sbjct 663304 ATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397062191914486
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |