Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq22 136 9e-27
seq40 95.1 3e-14
seq11 91.5 3e-13
>seq22
Length=1908885
Score = 136 bits (150), Expect = 9e-27
Identities = 171/231 (74%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || || | |||||| || || ||||| || |||||||
Sbjct 1644183 CCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 1644124
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || |||||||||||||| ||||| || ||||||
Sbjct 1644123 AGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGG---TCTGGG 1644067
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422
|| || || || |||||||| || ||| || || || || |||| ||| ||| ||
Sbjct 1644066 GGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATAGTGTCGGACGACTC 1644008
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct 1644007 CACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1643957
Score = 134 bits (148), Expect = 3e-26
Identities = 171/234 (73%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | || || || || | ||| || || ||||| || ||||||| |
Sbjct 663115 CCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 663174
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| ||||| ||||| || || || || || || |||||||| ||||| || |||
Sbjct 663175 AGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTG---GTCTGGC 663231
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || ||||| || || | || ||||| || || | |||| || ||
Sbjct 663232 GGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCG 663291
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| || || ||||| ||||| ||||| || ||||||||||| |||||||| |||
Sbjct 663292 ACCTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATGATG 663345
Score = 114 bits (126), Expect = 3e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||| | ||||| || || ||||| || || || || |||||
Sbjct 662467 TCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCATCTTCCAACTGCTTGCCCGCGAAA 662526
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| ||||| || | || || || || || ||||| || |||| || |||||
Sbjct 662527 ATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG 662586
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || ||||| ||||| ||||| |||||||| || ||||| |||||||||
Sbjct 662587 TCGATTGTGTCCGAAGATTCCACTTCCAGCGTAATCGTCTTACCCGTCAGGGTCTTGACG 662646
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 662647 AAAATCTGCAT 662657
>seq40
Length=2234633
Score = 95.1 bits (104), Expect = 3e-14
Identities = 202/290 (70%), Gaps = 10/290 (3%)
Strand=Plus/Plus
Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023
|||| |||||||||||||| | |||||| | |||||| | | || ||| |||| |
Sbjct 787543 ACGACAGGCGTGATGAACTCTTGGAAGAACTCGGGAATTGCCAACAGCGAAGG-AAACTG 787601
Query 326024 --CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 326081
|| | |||||||| |||| ||||| || ||| | || || |||| ||||
Sbjct 787602 GACT-TCCAAAAAGTTGATGAGAAGACCCTTGATATGACTACCATCGTGATCCTGATCGG 787660
Query 326082 TCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACA-CTTTACCGGTT 326140
||||||||||| ||| || ||||| || ||||| | || | || | | |
Sbjct 787661 CCATGATCATCAGATGGCCATAACGCAGGCTCTTGGTGTCGGTATAGACCTGTTTGTGCT 787720
Query 326141 TGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CCA 326198
| || ||| || | ||| |||| | ||| ||| || | |||||| ||||| || | | |
Sbjct 787721 TCAA-GCCCAGGAATTGCTTGATGTTCTG-GATCTCCTTGTTCTTTGTGAT-CTGGTCGA 787777
Query 326199 CGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCA 326248
|| |||||||| || ||||| ||||| ||||| ||||||||||| |||
Sbjct 787778 TTGAGGCATCGCGCACATTCAAAAGTTTACCACGCAGAGGGAACACACCA 787827
>seq11
Length=5116797
Score = 91.5 bits (100), Expect = 3e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || || | ||| || || ||||| || |||||||
Sbjct 2814746 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2814805
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
||||| || || || || | || || || || |||||||||||||| || | |||
Sbjct 2814806 AGCGTCCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 2814865
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| || || || |||||||| || ||| || || || || || | || || || ||
Sbjct 2814866 ATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATGGTGTCCGAGGACTCGAC 2814924
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
||||| ||||| ||||| || || || ||||| |||||
Sbjct 2814925 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 2814963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653750084154
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |