Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq22 136 9e-27 seq40 95.1 3e-14 seq11 91.5 3e-13 >seq22 Length=1908885 Score = 136 bits (150), Expect = 9e-27 Identities = 171/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | |||||| || || ||||| || ||||||| Sbjct 1644183 CCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 1644124 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || |||||||||||||| ||||| || |||||| Sbjct 1644123 AGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGG---TCTGGG 1644067 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || || || |||||||| || ||| || || || || |||| ||| ||| || Sbjct 1644066 GGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATAGTGTCGGACGACTC 1644008 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 1644007 CACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1643957 Score = 134 bits (148), Expect = 3e-26 Identities = 171/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || || || | ||| || || ||||| || ||||||| | Sbjct 663115 CCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 663174 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| ||||| || || || || || || |||||||| ||||| || ||| Sbjct 663175 AGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTG---GTCTGGC 663231 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || ||||| || || | || ||||| || || | |||| || || Sbjct 663232 GGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCG 663291 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| ||||| ||||| || ||||||||||| |||||||| ||| Sbjct 663292 ACCTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATGATG 663345 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | ||||| || || ||||| || || || || ||||| Sbjct 662467 TCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCATCTTCCAACTGCTTGCCCGCGAAA 662526 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || | || || || || || ||||| || |||| || ||||| Sbjct 662527 ATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG 662586 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| ||||| ||||| |||||||| || ||||| ||||||||| Sbjct 662587 TCGATTGTGTCCGAAGATTCCACTTCCAGCGTAATCGTCTTACCCGTCAGGGTCTTGACG 662646 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 662647 AAAATCTGCAT 662657 >seq40 Length=2234633 Score = 95.1 bits (104), Expect = 3e-14 Identities = 202/290 (70%), Gaps = 10/290 (3%) Strand=Plus/Plus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023 |||| |||||||||||||| | |||||| | |||||| | | || ||| |||| | Sbjct 787543 ACGACAGGCGTGATGAACTCTTGGAAGAACTCGGGAATTGCCAACAGCGAAGG-AAACTG 787601 Query 326024 --CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 326081 || | |||||||| |||| ||||| || ||| | || || |||| |||| Sbjct 787602 GACT-TCCAAAAAGTTGATGAGAAGACCCTTGATATGACTACCATCGTGATCCTGATCGG 787660 Query 326082 TCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACA-CTTTACCGGTT 326140 ||||||||||| ||| || ||||| || ||||| | || | || | | | Sbjct 787661 CCATGATCATCAGATGGCCATAACGCAGGCTCTTGGTGTCGGTATAGACCTGTTTGTGCT 787720 Query 326141 TGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CCA 326198 | || ||| || | ||| |||| | ||| ||| || | |||||| ||||| || | | | Sbjct 787721 TCAA-GCCCAGGAATTGCTTGATGTTCTG-GATCTCCTTGTTCTTTGTGAT-CTGGTCGA 787777 Query 326199 CGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCA 326248 || |||||||| || ||||| ||||| ||||| ||||||||||| ||| Sbjct 787778 TTGAGGCATCGCGCACATTCAAAAGTTTACCACGCAGAGGGAACACACCA 787827 >seq11 Length=5116797 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || ||||||| Sbjct 2814746 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2814805 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || || || || | || || || || |||||||||||||| || | ||| Sbjct 2814806 AGCGTCCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 2814865 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || |||||||| || ||| || || || || || | || || || || Sbjct 2814866 ATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATGGTGTCCGAGGACTCGAC 2814924 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 ||||| ||||| ||||| || || || ||||| ||||| Sbjct 2814925 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 2814963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653750084154