Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq40 100 6e-16 seq42 91.5 3e-13 >seq40 Length=2234633 Score = 100 bits (110), Expect = 6e-16 Identities = 203/290 (70%), Gaps = 10/290 (3%) Strand=Plus/Plus Query 298085 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 298144 |||| |||||||||||||| | |||||| | |||||| | | || ||| |||| | Sbjct 787543 ACGACAGGCGTGATGAACTCTTGGAAGAACTCGGGAATTGCCAACAGCGAAGG-AAACTG 787601 Query 298145 --CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 298202 || | |||||||| |||| ||||| || ||| | || || |||| |||| Sbjct 787602 GACT-TCCAAAAAGTTGATGAGAAGACCCTTGATATGACTACCATCGTGATCCTGATCGG 787660 Query 298203 TCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACA-CTTTACCGGTT 298261 ||||||||||| ||| || ||||| || ||||| | || | || | | | Sbjct 787661 CCATGATCATCAGATGGCCATAACGCAGGCTCTTGGTGTCGGTATAGACCTGTTTGTGCT 787720 Query 298262 TGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CCA 298319 | || ||| || | ||| |||| | ||| ||| || | |||||| ||||| || | | | Sbjct 787721 TCAA-GCCCAGGAATTGCTTGATGTTCTG-GATCTCCTTGTTCTTTGTGAT-CTGGTCGA 787777 Query 298320 CGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCA 298369 || |||||||| |||||||| ||||| ||||| ||||||||||| ||| Sbjct 787778 TTGAGGCATCGCGCACATTCAAAAGTTTACCACGCAGAGGGAACACACCA 787827 >seq42 Length=705881 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 ||||||||||| |||||| |||||||| || || || |||||||| | | || Sbjct 321530 GGCATGAACTCCACCCTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTC 321471 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 || || || | || || |||||| |||| |||||||| | |||||||||| ||| Sbjct 321470 GCCCTCGGCAACGACAAGGTGTACCGTTCCACCAACCCCTTCGACTTTATGGAGAACATC 321411 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGG 243746 || || || || || |||||||| || ||||| ||| |||| || || | | || || Sbjct 321410 TCCCTGGGTGGCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTACCAGAAGGCC-GG 321352 Query 243747 TGTGATG 243753 ||| ||| Sbjct 321351 TGTCATG 321345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879392382050