Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq41 401 6e-107 >seq41 Length=3900177 Score = 401 bits (444), Expect = 6e-107 Identities = 1111/1671 (66%), Gaps = 38/1671 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| || |||||| ||| |||||||||||| | ||||| Sbjct 918784 AACTACCAATACTTTGGCTTCAAGACCCTGGAGCGGTCCTACCTCCTCAAGCTCGATGGT 918725 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | | |||||| ||||| || || | |||||||| ||| | || || ||| | Sbjct 918724 AAGATCGTCGAGCGGCCGCAGCACATGATTATGCGCGTGGCCGTTGGTATCTGGGGCGAT 918665 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGC 93893 || || | |||| | | | | || ||||| | ||||| | ||| |||| | Sbjct 918664 GATGTGGAGCGTGTTGTCGAGACATACAACTACATGTCGAACAAGTTCTTTACGCATG-C 918606 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | | ||||| || |||||||| || || || | | ||| |||| || || ||||| | Sbjct 918605 CTCGCCGACGCTTTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCCTCCTGCTTCCTCGT 918546 Query 93954 -GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA 94012 ||| | |||| || ||| || || | ||||| |||||| ||||| | | Sbjct 918545 AGAC-ATGAAGGATGATAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGA 918487 Query 94013 TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCT 94072 |||| || || || || ||||| | | |||||| | | ||||| | || || | Sbjct 918486 TCTCCAAGACGGCTGGTGGCATCGGTCTGAATGTCCATCGCATTCGTGCTACCGGCTCTT 918427 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 |||| ||| || || ||||| ||||||||| || |||| ||||| || |||||||||| Sbjct 918426 ACATTGCCGGCACTAACGGCACATCCAACGGCATCATCCCCATGCTTCGTGTCTTCAACA 918367 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || |||| ||||||||||| |||||||| | | || ||| | ||| |||| Sbjct 918366 ACACGGCCCGCTACGTGGATCAGGGTGGCAACAAGCGGCCCGGTGCATTCTGCATCTACT 918307 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 | ||||| ||||| || || || | ||| |||||||||| |||||||| ||||| | Sbjct 918306 TGGAGCCGTGGCATGCCGATGTCTTTGAGTTCCTCGACCTGCGGAAGAACCAAGGCAAGG 918247 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | || | ||| | || || ||| ||| |||||| | || ||||| || ||||| | Sbjct 918246 AGGAGGTCCGTGCCCGTGATCTTTTCCTCGCACTCTGGATCCCCGACCTGTTCATGAAGC 918187 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | || ||||| ||| || |||| || | || ||||| ||||| |||| ||| | | Sbjct 918186 GTGTGGAGAAGAACGGCGAGTGGACGCTGATGTGCCCCAACGAATGCGCCGGCCTGGCTG 918127 Query 94373 ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGG-CAAGGC 94430 | | || | ||||| | |||| | |||| | ||| |||| | || Sbjct 918126 ATTGCTACGGCGAGGAGTTTGAGGCTCTGTACGAGAAATACG-AGCGCGAGGGTCGCGGT 918068 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | | ||| || | || |||||||||| || || |||| | ||| |||||| Sbjct 918067 C-GCAAGAAGATCAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAGGCGCAGACGGAGAC 918009 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 ||| | |||| ||| | | |||||| | ||| |||| |||| ||||||| || ||| Sbjct 918008 GGGCAACCCCTTCATGCTCTACAAGGACCACTG-CAACCGCAAGAGCAACCAGAAGAACC 917950 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 | || ||| |||||||| ||||||| |||||||||||||| | ||||||||| Sbjct 917949 TGGGTACCATCCGCAGCTCGAACTTGTGCACGGAGATTGTCGAGTACTCGGCTCCGGACG 917890 Query 94610 AGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA-GATGCCTAC 94668 || | |||||||| ||| ||| ||| | || | ||||||| ||| || | || Sbjct 917889 AGGTGGCTGTGTGCAACTTGGCCTCTTTGGCTCTTCCGTCTTTCGT-CGACTATAACAAC 917831 Query 94669 ACGTC-TACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT 94727 ||| || |||| || ||| | || ||| | ||| | | | ||| Sbjct 917830 GAGTCGTATGACTTCCAGAGA-CTGCACGA---TGTCA----CGCAG--CTGGTTGTCCG 917781 Query 94728 GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 ||||||||| | | || || |||| |||||| || || || || |||| || Sbjct 917780 CAACCTGAACCGCATCATTGATGTCAACTACTACCCTGTGCCAGAAGCACGGAACAGTAA 917721 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | || || || ||||| || | || || |||||| | |||||||| | || | | Sbjct 917720 CATGCGCCACCGTCCCATTGGTCTGGGTGTGCAGGGTCTGGCGGACGCCTTCCTGGCGCT 917661 Query 94848 GCGTCTGCCCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 ||| |||||| || ||| ||| || || | |||| | | | || || | || Sbjct 917660 GCGCATGCCCTTTGAGTCTCCCGAGGCACGCCTG-CTGAACAAGCAGGTCTTTGAGACCA 917602 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCC-AGATCGGACGGCGGGCCACAC 94965 | || ||| ||| ||| | || | | ||||| |||| || ||| | || Sbjct 917601 TCTACCACGCGGCGCTGACGGAGTCGTGCGAGCTGGCCAAGAT-TGAGGGC---ACCTAC 917546 Query 94966 GAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTG 95025 | | | || || || || ||||| ||| | ||| |||| | |||| ||| Sbjct 917545 CAGACATATGAGGGGTCTCCTGTGTCGCAGGGTATTCTGCAGCCCGACATGTGGGATGTC 917486 Query 95026 AAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCA---AACACGGT 95082 | ||| |||| |||| || ||||| | || || ||||| | |||| | |||||| Sbjct 917485 ACGCCATCGGACCTGTGGGATTGGGACTCGCTGCG-GCTGAAG--ATCAAGGAGCACGGT 917429 Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142 ||| ||| ||||| ||||| || ||||| ||||| || ||| | ||||| || ||| Sbjct 917428 GTGCGCAACAGTCTGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCACAGATTCTGGGC 917369 Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202 |||||||||| ||||| || | ||| |||||| | ||| |||| ||||| ||||| Sbjct 917368 AACAACGAGTGCTTCGAGCCGTACACATCCAACATTTACTCGCGGCGTGTGCTGGCCGGT 917309 Query 95203 GAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGG 95261 || |||| || ||||| | || || |||||| | || | ||||| ||||| Sbjct 917308 GAGTTCCAGGTGGTCAACCCGTGGCTGCTCAAGGACCTGGTCGAC-ATGGGTCTGTGGTC 917250 Query 95262 TGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAAT 95321 ||||| | ||||||| | | || ||||| || |||||||||| || | || Sbjct 917249 GGACAACATGAAGAACCGCATCATTGCCGAGAACGGTTCGATCCAGAACATTCCCAACAT 917190 Query 95322 ACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 |||| ||||||||||| || |||||||| |||||||||||| | ||||| Sbjct 917189 CCCGGCAGACATCAAGGCTCTGTACAAGACGGTGTGGGAGATCTCTCAGCG 917139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722934086280