Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq41 183 3e-41
seq42 114 1e-20
seq22 89.7 5e-13
seq11 82.4 8e-11
>seq41
Length=3900177
Score = 183 bits (202), Expect = 3e-41
Identities = 751/1165 (64%), Gaps = 43/1165 (4%)
Strand=Plus/Plus
Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068
||||| | || || || |||||||||| || ||||| || |||| ||| || | | |
Sbjct 917271 AGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCACCGGCCAGCACACGCCGCGAG 917330
Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128
|| | ||| ||| | || || ||| | ||||| ||||| || || || | ||| |
Sbjct 917331 TAAATGTTGGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGACGTCGAC 917390
Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGC-TCGAATGTCGTC 153187
|| |||||||| |||||||| || | || |||| |||||| | | || || |
Sbjct 917391 GCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATCTTCAGC 917450
Query 153188 CTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA- 153246
| || || | |||||||||||| |||| || || | | |||||||||| ||| |
Sbjct 917451 CG-CAGCGAGTCCCAATCCCACAGGTCCGATGGCGTGACATCCCACATGTCGGGCTGCAG 917509
Query 153247 -ACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCC 153305
| || | |||| | ||| || || | || |||| |||| || | ||||
Sbjct 917510 AATACCCTGCGACACAGGAGAC--CCCTCATATGTCTGGTAGGTGCCCTCAATCTTGGCC 917567
Query 153306 AGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA 153365
|| ||||| || ||||| | | ||| ||||| || || || || || ||
Sbjct 917568 AGCTCGCACGACTCCGTCAGCGCCGCGTGGTAGATGGTCTCAAAGACCTGCTTGTTCAGC 917627
Query 153366 ACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCC 153425
| | || || ||| | |||||||||||| || |||||||| |||||||||
Sbjct 917628 AGGCGTGCCTCGGGAGACTCAAAGGGCATGCGCAGCGCCAGGAAGGCGTCCGCCAGACCC 917687
Query 153426 TGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCG-CTCGCTATGGG 153484
|| | ||| | || ||||| || || | ||| ||| || || || || |||
Sbjct 917688 TGCACACCCAGACCAATGGGACGGTGGCGCATGTTACTGTTCCGTGCTTCTGGCACAGGG 917747
Query 153485 ATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTT 153544
|||| ||| ||| || || ||| |||||||| || |||| | || | | |
Sbjct 917748 -TAGTAGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCAGCTGCGTGACATCGTG 917806
Query 153545 AAGTTTCTCGAAATCATAGG--TCATT----TCGTCGACGCGTACGCATCGATTCACGGC 153598
||| ||| ||| ||||| | || || | ||||||| | | | || | ||
Sbjct 917807 CAGTCTCTGGAAGTCATACGACTCGTTGTTATAGTCGACGA--AAG-ACGGA---AGAGC 917860
Query 153599 AATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGG 153657
| ||| |||| || || || ||| ||| || || | || ||||| || ||||| |
Sbjct 917861 CAAAGAGGCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGA-GTACTCGACAATCTCCG 917919
Query 153658 CGCAGAGGTT---GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGC 153714
||| | ||| ||||| ||| |||| || | ||| ||||| ||||| ||||
Sbjct 917920 TGCACAAGTTCGAGCTGCGG---ATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGC 917976
Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AA 153771
| ||| ||| |||||||| | || ||| ||||| |||| || | || |
Sbjct 917977 AGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCAT 918036
Query 153772 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831
||| ||| | ||| || | | || ||| ||| ||||||| ||||||| ||
Sbjct 918037 ACCA---CAGCTTCTGGGCCTTGATCTTCTTGCGACCGCGACCCTCGCGCTCGTATTTCT 918093
Query 153832 CGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGAC 153891
||||||| ||||||||| ||||||||||| || || ||||||| || | | || |
Sbjct 918094 CGTACAGAGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCGGCGCATTCGTTGGGGC 918153
Query 153892 ACATCAGCGACCACATATCGTCGGCGTT---GACGCGTCGCATGAACAGATCCGGCACCC 153948
||||||||| |||| ||| || || || || ||||||||| || || | ||
Sbjct 918154 ACATCAGCGTCCAC---TCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATCC 918210
Query 153949 AGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGAT 154008
|||| ||| | || || || || | |||||| ||| ||| ||| |
Sbjct 918211 AGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTCTTCCGCAGGT 918270
Query 154009 TGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTAC 154068
||| | | ||| ||||| ||||| || || | ||||| | | ||||| |
Sbjct 918271 CGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATGCAGAATGCACCGGGCC 918330
Query 154069 GC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTT 154125
|| || || |||||||| |||| ||| || | ||||||||||| || | ||||||
Sbjct 918331 GCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCATGGGGA 918390
Query 154126 CCAGGCCGCTTGCGGTGCCGTTGGT 154150
| |||| | | |||||||| ||
Sbjct 918391 TGATGCCGTTGGATGTGCCGTTAGT 918415
>seq42
Length=705881
Score = 114 bits (126), Expect = 1e-20
Identities = 303/457 (66%), Gaps = 33/457 (7%)
Strand=Plus/Minus
Query 52396 AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCA 52455
||||| | ||||| ||||| || |||||| | || || |||| ||| | |||
Sbjct 321802 AGCGCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGGCGCCTTCTCTTCCA 321743
Query 52456 TCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATAT 52515
|||| | | || | | ||| | ||||| || ||||| ||| ||| ||| |||| |
Sbjct 321742 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATTT 321683
Query 52516 CGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT------CTACTAC---AAGACGC 52566
| |||||||| || |||||||| |||||||| ||||| || | || || | |
Sbjct 321682 CCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCTGCTGTTCTCCCACCTGAACAACC 321623
Query 52567 GCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTA 52626
|| |||| || ||| ||||| | ||| | || || || |
Sbjct 321622 GC----CCGAGCAAGCAGAT--------GATCCAGGACATTATTGTCGATGCTGTCAAGA 321575
Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686
| || ||||||| | |||| || |||||| | ||||||||||||||| | ||
Sbjct 321574 TTGAGCAGGAGTTCCTGACGGAGGCTCTGCCGTGTGCTCTGCTGGGCATGAACTC-CACC 321516
Query 52687 C-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-GCC 52744
| |||| ||||||| |||||||| || || |||||| |||| ||||| | | |
Sbjct 321515 CTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCGCCCTCGGCAACGAC 321456
Query 52745 AAAGT--AC--TTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800
|| || || ||| || ||| || || || |||||| | ||||| || || | |
Sbjct 321455 AAGGTGTACCGTTCCAC-----CAACCCCTTCGACTTTATGGAGAACATCTCCCTGGGTG 321401
Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||||||||||||| || |||||||| ||||| || ||
Sbjct 321400 GCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTA 321364
>seq22
Length=1908885
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||||| || || || | | |||||||| || ||||||||||| |
Sbjct 662659 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAC 662718
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||| || || || || | | || || ||||| ||||| |||||
Sbjct 662719 AGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 662778
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || ||||| ||| || |||| | || | ||||| | |||||| ||
Sbjct 662779 ATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAACT 662838
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | ||| | ||| || || || || || || ||||| || |||||
Sbjct 662839 TCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885
Score = 87.8 bits (96), Expect = 2e-12
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | || || |||||||| || || || | |
Sbjct 662920 GACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCA 662979
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT--TGTTTTA 138538
|||| || ||||| ||||| || || || || || ||||| ||| | || | ||
Sbjct 662980 AAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC-CTGAATCTTGCTCTTGAC 663038
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | ||||||| |||||| ||||||| || | || || || || || || |
Sbjct 663039 ATTG-TCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCT 663097
Query 138599 TTACAAAAATCTGCAT 138614
| ||||| || |||||
Sbjct 663098 TGACAAAGATTTGCAT 663113
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||| || || || ||||| || || || || | |
Sbjct 1644148 CTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAA 1644089
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541
||| || ||||| ||||| || || || || || ||||| ||| || || | |||
Sbjct 1644088 GATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATT 1644029
Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601
|| | | ||||||| |||||||||||| | || | || || || ||||| || || |
Sbjct 1644028 GT-CGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGA 1643970
Query 138602 CAAAAATCTGCATGG 138616
| || ||||||||||
Sbjct 1643969 CGAAGATCTGCATGG 1643955
>seq11
Length=5116797
Score = 82.4 bits (90), Expect = 8e-11
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| || || || |||||||| || || || | |
Sbjct 2814779 GACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTCGAGCTGCTTGCCAGCA 2814838
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539
|||| |||||||| ||||| || || || || || ||||| ||| || | || |
Sbjct 2814839 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTGACA 2814898
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||| | ||||| ||||||| || | || || || || || || ||
Sbjct 2814899 TTG-TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTT 2814957
Query 138600 TACAAAA 138606
|| |||
Sbjct 2814958 CACGAAA 2814964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262133258960
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