Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq41 183 3e-41 seq42 114 1e-20 seq22 89.7 5e-13 seq11 82.4 8e-11 >seq41 Length=3900177 Score = 183 bits (202), Expect = 3e-41 Identities = 751/1165 (64%), Gaps = 43/1165 (4%) Strand=Plus/Plus Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068 ||||| | || || || |||||||||| || ||||| || |||| ||| || | | | Sbjct 917271 AGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCACCGGCCAGCACACGCCGCGAG 917330 Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128 || | ||| ||| | || || ||| | ||||| ||||| || || || | ||| | Sbjct 917331 TAAATGTTGGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGACGTCGAC 917390 Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGC-TCGAATGTCGTC 153187 || |||||||| |||||||| || | || |||| |||||| | | || || | Sbjct 917391 GCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATCTTCAGC 917450 Query 153188 CTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA- 153246 | || || | |||||||||||| |||| || || | | |||||||||| ||| | Sbjct 917451 CG-CAGCGAGTCCCAATCCCACAGGTCCGATGGCGTGACATCCCACATGTCGGGCTGCAG 917509 Query 153247 -ACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCC 153305 | || | |||| | ||| || || | || |||| |||| || | |||| Sbjct 917510 AATACCCTGCGACACAGGAGAC--CCCTCATATGTCTGGTAGGTGCCCTCAATCTTGGCC 917567 Query 153306 AGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA 153365 || ||||| || ||||| | | ||| ||||| || || || || || || Sbjct 917568 AGCTCGCACGACTCCGTCAGCGCCGCGTGGTAGATGGTCTCAAAGACCTGCTTGTTCAGC 917627 Query 153366 ACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCC 153425 | | || || ||| | |||||||||||| || |||||||| ||||||||| Sbjct 917628 AGGCGTGCCTCGGGAGACTCAAAGGGCATGCGCAGCGCCAGGAAGGCGTCCGCCAGACCC 917687 Query 153426 TGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCG-CTCGCTATGGG 153484 || | ||| | || ||||| || || | ||| ||| || || || || ||| Sbjct 917688 TGCACACCCAGACCAATGGGACGGTGGCGCATGTTACTGTTCCGTGCTTCTGGCACAGGG 917747 Query 153485 ATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTT 153544 |||| ||| ||| || || ||| |||||||| || |||| | || | | | Sbjct 917748 -TAGTAGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCAGCTGCGTGACATCGTG 917806 Query 153545 AAGTTTCTCGAAATCATAGG--TCATT----TCGTCGACGCGTACGCATCGATTCACGGC 153598 ||| ||| ||| ||||| | || || | ||||||| | | | || | || Sbjct 917807 CAGTCTCTGGAAGTCATACGACTCGTTGTTATAGTCGACGA--AAG-ACGGA---AGAGC 917860 Query 153599 AATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGG 153657 | ||| |||| || || || ||| ||| || || | || ||||| || ||||| | Sbjct 917861 CAAAGAGGCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGA-GTACTCGACAATCTCCG 917919 Query 153658 CGCAGAGGTT---GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGC 153714 ||| | ||| ||||| ||| |||| || | ||| ||||| ||||| |||| Sbjct 917920 TGCACAAGTTCGAGCTGCGG---ATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGC 917976 Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AA 153771 | ||| ||| |||||||| | || ||| ||||| |||| || | || | Sbjct 917977 AGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCAT 918036 Query 153772 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831 ||| ||| | ||| || | | || ||| ||| ||||||| ||||||| || Sbjct 918037 ACCA---CAGCTTCTGGGCCTTGATCTTCTTGCGACCGCGACCCTCGCGCTCGTATTTCT 918093 Query 153832 CGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGAC 153891 ||||||| ||||||||| ||||||||||| || || ||||||| || | | || | Sbjct 918094 CGTACAGAGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCGGCGCATTCGTTGGGGC 918153 Query 153892 ACATCAGCGACCACATATCGTCGGCGTT---GACGCGTCGCATGAACAGATCCGGCACCC 153948 ||||||||| |||| ||| || || || || ||||||||| || || | || Sbjct 918154 ACATCAGCGTCCAC---TCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATCC 918210 Query 153949 AGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGAT 154008 |||| ||| | || || || || | |||||| ||| ||| ||| | Sbjct 918211 AGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTCTTCCGCAGGT 918270 Query 154009 TGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTAC 154068 ||| | | ||| ||||| ||||| || || | ||||| | | ||||| | Sbjct 918271 CGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATGCAGAATGCACCGGGCC 918330 Query 154069 GC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTT 154125 || || || |||||||| |||| ||| || | ||||||||||| || | |||||| Sbjct 918331 GCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCATGGGGA 918390 Query 154126 CCAGGCCGCTTGCGGTGCCGTTGGT 154150 | |||| | | |||||||| || Sbjct 918391 TGATGCCGTTGGATGTGCCGTTAGT 918415 >seq42 Length=705881 Score = 114 bits (126), Expect = 1e-20 Identities = 303/457 (66%), Gaps = 33/457 (7%) Strand=Plus/Minus Query 52396 AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCA 52455 ||||| | ||||| ||||| || |||||| | || || |||| ||| | ||| Sbjct 321802 AGCGCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGGCGCCTTCTCTTCCA 321743 Query 52456 TCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATAT 52515 |||| | | || | | ||| | ||||| || ||||| ||| ||| ||| |||| | Sbjct 321742 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATTT 321683 Query 52516 CGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT------CTACTAC---AAGACGC 52566 | |||||||| || |||||||| |||||||| ||||| || | || || | | Sbjct 321682 CCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCTGCTGTTCTCCCACCTGAACAACC 321623 Query 52567 GCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTA 52626 || |||| || ||| ||||| | ||| | || || || | Sbjct 321622 GC----CCGAGCAAGCAGAT--------GATCCAGGACATTATTGTCGATGCTGTCAAGA 321575 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 | || ||||||| | |||| || |||||| | ||||||||||||||| | || Sbjct 321574 TTGAGCAGGAGTTCCTGACGGAGGCTCTGCCGTGTGCTCTGCTGGGCATGAACTC-CACC 321516 Query 52687 C-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-GCC 52744 | |||| ||||||| |||||||| || || |||||| |||| ||||| | | | Sbjct 321515 CTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCGCCCTCGGCAACGAC 321456 Query 52745 AAAGT--AC--TTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 || || || ||| || ||| || || || |||||| | ||||| || || | | Sbjct 321455 AAGGTGTACCGTTCCAC-----CAACCCCTTCGACTTTATGGAGAACATCTCCCTGGGTG 321401 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||||| || |||||||| ||||| || || Sbjct 321400 GCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTA 321364 >seq22 Length=1908885 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | |||||||| || ||||||||||| | Sbjct 662659 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAC 662718 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | | || || ||||| ||||| ||||| Sbjct 662719 AGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 662778 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || |||| | || | ||||| | |||||| || Sbjct 662779 ATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAACT 662838 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || || || || || ||||| || ||||| Sbjct 662839 TCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||||| || || || | | Sbjct 662920 GACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCA 662979 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT--TGTTTTA 138538 |||| || ||||| ||||| || || || || || ||||| ||| | || | || Sbjct 662980 AAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC-CTGAATCTTGCTCTTGAC 663038 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||||| |||||| ||||||| || | || || || || || || | Sbjct 663039 ATTG-TCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCT 663097 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| || ||||| Sbjct 663098 TGACAAAGATTTGCAT 663113 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| || || || ||||| || || || || | | Sbjct 1644148 CTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAA 1644089 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| || ||||| ||||| || || || || || ||||| ||| || || | ||| Sbjct 1644088 GATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATT 1644029 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | ||||||| |||||||||||| | || | || || || ||||| || || | Sbjct 1644028 GT-CGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGA 1643970 Query 138602 CAAAAATCTGCATGG 138616 | || |||||||||| Sbjct 1643969 CGAAGATCTGCATGG 1643955 >seq11 Length=5116797 Score = 82.4 bits (90), Expect = 8e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || |||||||| || || || | | Sbjct 2814779 GACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTCGAGCTGCTTGCCAGCA 2814838 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| |||||||| ||||| || || || || || ||||| ||| || | || | Sbjct 2814839 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTGACA 2814898 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||||| ||||||| || | || || || || || || || Sbjct 2814899 TTG-TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTT 2814957 Query 138600 TACAAAA 138606 || ||| Sbjct 2814958 CACGAAA 2814964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262133258960