Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq41 140 3e-28 seq22 116 4e-21 seq11 111 1e-19 seq42 96.9 3e-15 >seq41 Length=3900177 Score = 140 bits (154), Expect = 3e-28 Identities = 752/1173 (64%), Gaps = 58/1173 (5%) Strand=Plus/Plus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 || ||| || ||| |||||| || || ||||||||||||| ||||| ||||| || || Sbjct 917261 CATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCACCGGCCAGCAC 917320 Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153 |||| | || | |||| ||| |||||||||| |||||||||| || || ||||| Sbjct 917321 ACGCCGCGAGTAAATGTTGGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 917380 Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTT 146212 | ||||| || || ||||| ||||||||||| | ||| | ||| ||||| || || Sbjct 917381 TGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTT 917440 Query 146213 GAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272 | ||||| ||| || | ||||| ||||| | |||| || || || | Sbjct 917441 G-ATCTTCAGCCGCAGCGAGTCCCAATCCCACA---GGTCCGATGGCGTGACATCCCACA 917496 Query 146273 TGTCGTAATGCATAGTGCC--GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACC 146330 ||||| |||| | | || ||| ||||| | | ||| || | | || | || Sbjct 917497 TGTCGGGCTGCAGAATACCCTGCGACACAGGAGAC--CCCTCATATGTCTGGTAGGTGCC 917554 Query 146331 GTCGATCTTGGCCAGTTCGCAGCTAGCTTC--CAGAGCCGAAAAGTATATGGTCTCCGCG 146388 || ||||||||||| ||||| | | || | ||| |||| ||| |||||||| | Sbjct 917555 CTCAATCTTGGCCAGCTCGCA-CGA-CTCCGTCAGCGCCGCGTGGTAGATGGTCTCAAAG 917612 Query 146389 ATCATGTAGTTGACGCTCCTGGCCT-CCTCG---CTGTCGTAGGGGATATCGAGAAGCAC 146444 | | | ||| | | ||| | ||||| || |||| || || || Sbjct 917613 ACCTGCTTGTT----CAGCAGGCGTGCCTCGGGAGACTCAAAGGGCATGCGCAGCGCCAG 917668 Query 146445 AAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT 146504 |||||||| || |||||||| | || | ||||| ||| ||||| | |||||||||| Sbjct 917669 GAAGGCGTCCGCCAGACCCTGCACACCCAGACCAATGGGACGGTGGCGCATGTTACTGTT 917728 Query 146505 CGCAGC-GCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGA 146563 | || | ||| ||| |||| |||| || ||||| ||| || || || || | Sbjct 917729 CCGTGCTTCTGGCACAGGG-TAGTAGTTGACATCAATGATGCGGTTCAGGTTGCGGACAA 917787 Query 146564 CAATTTTCGTCAAACGATTCAG---CAGGACATAGTCAAATGTTTTAGTTTTAACGTTGA 146620 | | | ||| | | | ||| | ||| ||||| | | | | ||| || || Sbjct 917788 CCAGCTGCGTGACATCGTGCAGTCTCTGGA---AGTCATACGACTCGTTGTTATAGTCGA 917844 Query 146621 CGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAAT 146680 || | | || | |||||||||||| || || || ||||||| | | | Sbjct 917845 CGAAAGACGGAAGAGCCAAAGAGGCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGAGT 917904 Query 146681 ACTGCACAATCTCGGCGCAGAGGTT---GCTGCACTTGATGATGCCCAAAtttttttGGT 146737 ||| |||||||| | ||| | ||| ||||| |||| | |||| || || |||| Sbjct 917905 ACTCGACAATCTCCGTGCACAAGTTCGAGCTGC---GGATGGTACCCAGGTTCTTCTGGT 917961 Query 146738 TACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTA-CGGTCCCCCGGTTTCGACA 146793 | || ||| ||||||| ||||||||||||||||| | ||| |||| | || | Sbjct 917962 TGCT---CTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTC- 918017 Query 146794 TTGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACAGTTT 146852 | | ||| | ||| | | || | | ||||| | || | |||| || || | Sbjct 918018 TGCGCCTCCAGAATG--GCATACCACAGCTTCTGGGCCTTGATCTTCTTGCG-ACCG-CG 918073 Query 146853 ATTCT---TTTCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGG 146907 | || |||||||||||||||| ||||| || | ||||| || Sbjct 918074 ACCCTCGCGCTCGTATTTCTCGTACAGAGCCTCAAACTCCTCG--CCGTAGCAATCAGCC 918131 Query 146908 AGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCC 146967 ||||||| | | ||||| || | ||||| ||| || |||| || ||| || | | Sbjct 918132 AGGCCGGCGCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTC 918191 Query 146968 ATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAG 147027 || |||| ||||| ||||| || | || | | || || || | | ||||| | Sbjct 918192 ATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTG 918251 Query 147028 CCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTAT 147087 || ||| | || || ||||| || | | || | |||||| ||||||| ||| Sbjct 918252 CCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAG 918311 Query 147088 GCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTG 147144 | || ||| || ||| || || |||||||| |||| ||| || |||| ||| Sbjct 918312 ATGCAGAATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTG 918371 Query 147145 AAGACTCGTAACATGGACACGAGGCCGCCGGAT 147177 ||||| || | ||||| | || |||| |||| Sbjct 918372 AAGACACGAAGCATGGGGATGATGCCGTTGGAT 918404 >seq22 Length=1908885 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||| ||||| || ||||| ||||| || || ||| || | Sbjct 662443 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCA 662502 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || || ||| | |||| |||||||| || || || |||||||||||| Sbjct 662503 TCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTG 662562 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || ||| ||||| |||| |||| ||||||| | || ||||| | || | Sbjct 662563 TCCTGAATCTTCGACTTGACGTTG-TCGATTGTGTCCGAAGATTCCACTTCCAGCGTAAT 662621 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || ||||| || || || ||||||||||| Sbjct 662622 CGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||| ||||| || || || ||||| || | Sbjct 662659 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAC 662718 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| | |||| |||||||| |||||||| Sbjct 662719 AGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 662778 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| ||| ||| | |||| |||| ||||| | ||| || Sbjct 662779 ATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTG-TCGATTGTGTCAGACGACTCAAC 662837 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||| |||||||| || || || ||||| || ||||| Sbjct 662838 TTCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 663115 CCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 663174 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || | ||| || ||||| |||||| |||||||| || || || Sbjct 663175 AGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 663234 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| || | ||| || | | |||||| Sbjct 663235 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCAATGGTATCGGAAGACTCGAC 663293 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || |||||||| || || || || || ||||||||| Sbjct 663294 CTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATG 663342 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| ||||| || | ||| ||| || || || ||||| ||| Sbjct 1644186 GCGCCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCG 1644127 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || || ||| |||||| |||||||| || || Sbjct 1644126 GACAGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGG 1644067 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| ||||| | ||| Sbjct 1644066 GGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGACTCC 1644007 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || || | ||| | || ||||| ||||| || || || || |||||||||| Sbjct 1644006 ACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGG 1643955 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| | ||||| ||| || ||||| || ||| Sbjct 662917 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 662976 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| || || || ||||||||||||||| || || |||| Sbjct 662977 GCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGCTCTTG 663036 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | |||||| |||| || | || |||||||| || || Sbjct 663037 ACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTC 663096 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 663097 TTGACAAAGATTTGCAT 663113 >seq11 Length=5116797 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 2814746 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2814805 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || ||||| |||||| |||||||| || || || Sbjct 2814806 AGCGTCCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 2814865 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||||| |||||| Sbjct 2814866 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCCGAGGACTCGACC 2814925 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 |||| ||| | || ||||| || || || || || ||| Sbjct 2814926 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 2814964 >seq42 Length=705881 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 47343 GACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAA 47402 ||||| ||| ||| || ||| |||||| |||||| | | ||||||||||| Sbjct 321599 GACATTATTGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCTCTGCCGTGT 321540 Query 47403 TCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGC 47462 || | |||| |||||| | | |||| ||||||| || ||||| |||||||| Sbjct 321539 GCTCTGCTGGGCATGAACTCCACCCTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGT 321480 Query 47463 CTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATG 47522 ||||| || || | |||| | |||| || || || ||||| |||||| Sbjct 321479 CTGCTGGTCGCCCTCGGCAACGACAAGGTGTACCGTTCCACCAACCCCTTCGACTTTATG 321420 Query 47523 AACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| || || | |||||||||||||| || |||||||||||||| || || Sbjct 321419 GAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTA 321364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500544418320