Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq41 140 3e-28
seq22 116 4e-21
seq11 111 1e-19
seq42 96.9 3e-15
>seq41
Length=3900177
Score = 140 bits (154), Expect = 3e-28
Identities = 752/1173 (64%), Gaps = 58/1173 (5%)
Strand=Plus/Plus
Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093
|| ||| || ||| |||||| || || ||||||||||||| ||||| ||||| || ||
Sbjct 917261 CATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCACCGGCCAGCAC 917320
Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153
|||| | || | |||| ||| |||||||||| |||||||||| || || |||||
Sbjct 917321 ACGCCGCGAGTAAATGTTGGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 917380
Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTT 146212
| ||||| || || ||||| ||||||||||| | ||| | ||| ||||| || ||
Sbjct 917381 TGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTT 917440
Query 146213 GAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272
| ||||| ||| || | ||||| ||||| | |||| || || || |
Sbjct 917441 G-ATCTTCAGCCGCAGCGAGTCCCAATCCCACA---GGTCCGATGGCGTGACATCCCACA 917496
Query 146273 TGTCGTAATGCATAGTGCC--GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACC 146330
||||| |||| | | || ||| ||||| | | ||| || | | || | ||
Sbjct 917497 TGTCGGGCTGCAGAATACCCTGCGACACAGGAGAC--CCCTCATATGTCTGGTAGGTGCC 917554
Query 146331 GTCGATCTTGGCCAGTTCGCAGCTAGCTTC--CAGAGCCGAAAAGTATATGGTCTCCGCG 146388
|| ||||||||||| ||||| | | || | ||| |||| ||| |||||||| |
Sbjct 917555 CTCAATCTTGGCCAGCTCGCA-CGA-CTCCGTCAGCGCCGCGTGGTAGATGGTCTCAAAG 917612
Query 146389 ATCATGTAGTTGACGCTCCTGGCCT-CCTCG---CTGTCGTAGGGGATATCGAGAAGCAC 146444
| | | ||| | | ||| | ||||| || |||| || || ||
Sbjct 917613 ACCTGCTTGTT----CAGCAGGCGTGCCTCGGGAGACTCAAAGGGCATGCGCAGCGCCAG 917668
Query 146445 AAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT 146504
|||||||| || |||||||| | || | ||||| ||| ||||| | ||||||||||
Sbjct 917669 GAAGGCGTCCGCCAGACCCTGCACACCCAGACCAATGGGACGGTGGCGCATGTTACTGTT 917728
Query 146505 CGCAGC-GCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGA 146563
| || | ||| ||| |||| |||| || ||||| ||| || || || || |
Sbjct 917729 CCGTGCTTCTGGCACAGGG-TAGTAGTTGACATCAATGATGCGGTTCAGGTTGCGGACAA 917787
Query 146564 CAATTTTCGTCAAACGATTCAG---CAGGACATAGTCAAATGTTTTAGTTTTAACGTTGA 146620
| | | ||| | | | ||| | ||| ||||| | | | | ||| || ||
Sbjct 917788 CCAGCTGCGTGACATCGTGCAGTCTCTGGA---AGTCATACGACTCGTTGTTATAGTCGA 917844
Query 146621 CGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAAT 146680
|| | | || | |||||||||||| || || || ||||||| | | |
Sbjct 917845 CGAAAGACGGAAGAGCCAAAGAGGCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGAGT 917904
Query 146681 ACTGCACAATCTCGGCGCAGAGGTT---GCTGCACTTGATGATGCCCAAAtttttttGGT 146737
||| |||||||| | ||| | ||| ||||| |||| | |||| || || ||||
Sbjct 917905 ACTCGACAATCTCCGTGCACAAGTTCGAGCTGC---GGATGGTACCCAGGTTCTTCTGGT 917961
Query 146738 TACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTA-CGGTCCCCCGGTTTCGACA 146793
| || ||| ||||||| ||||||||||||||||| | ||| |||| | || |
Sbjct 917962 TGCT---CTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTC- 918017
Query 146794 TTGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACAGTTT 146852
| | ||| | ||| | | || | | ||||| | || | |||| || || |
Sbjct 918018 TGCGCCTCCAGAATG--GCATACCACAGCTTCTGGGCCTTGATCTTCTTGCG-ACCG-CG 918073
Query 146853 ATTCT---TTTCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGG 146907
| || |||||||||||||||| ||||| || | ||||| ||
Sbjct 918074 ACCCTCGCGCTCGTATTTCTCGTACAGAGCCTCAAACTCCTCG--CCGTAGCAATCAGCC 918131
Query 146908 AGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCC 146967
||||||| | | ||||| || | ||||| ||| || |||| || ||| || | |
Sbjct 918132 AGGCCGGCGCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTC 918191
Query 146968 ATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAG 147027
|| |||| ||||| ||||| || | || | | || || || | | ||||| |
Sbjct 918192 ATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTG 918251
Query 147028 CCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTAT 147087
|| ||| | || || ||||| || | | || | |||||| ||||||| |||
Sbjct 918252 CCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAG 918311
Query 147088 GCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTG 147144
| || ||| || ||| || || |||||||| |||| ||| || |||| |||
Sbjct 918312 ATGCAGAATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTG 918371
Query 147145 AAGACTCGTAACATGGACACGAGGCCGCCGGAT 147177
||||| || | ||||| | || |||| ||||
Sbjct 918372 AAGACACGAAGCATGGGGATGATGCCGTTGGAT 918404
>seq22
Length=1908885
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||||| || | ||| ||||| || ||||| ||||| || || ||| || |
Sbjct 662443 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCA 662502
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || | ||| || || ||| | |||| |||||||| || || || ||||||||||||
Sbjct 662503 TCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTG 662562
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
||| || ||| ||||| |||| |||| ||||||| | || ||||| | || |
Sbjct 662563 TCCTGAATCTTCGACTTGACGTTG-TCGATTGTGTCCGAAGATTCCACTTCCAGCGTAAT 662621
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| || || ||||| || || || |||||||||||
Sbjct 662622 CGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||||| || | ||| ||||| || || || ||||| || |
Sbjct 662659 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAC 662718
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || ||| | |||| |||||||| ||||||||
Sbjct 662719 AGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 662778
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| ||||||||||| ||| ||| ||| | |||| |||| ||||| | ||| ||
Sbjct 662779 ATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTG-TCGATTGTGTCAGACGACTCAAC 662837
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | ||| |||||||| || || || ||||| || |||||
Sbjct 662838 TTCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | || ||||| || || || ||||| |||
Sbjct 663115 CCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 663174
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || | ||| || ||||| |||||| |||||||| || || ||
Sbjct 663175 AGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 663234
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || || ||||| |||| || | ||| || | | ||||||
Sbjct 663235 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCAATGGTATCGGAAGACTCGAC 663293
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || |||||||| || || || || || |||||||||
Sbjct 663294 CTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATG 663342
Score = 107 bits (118), Expect = 2e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | |||| ||||| || | ||| ||| || || || ||||| |||
Sbjct 1644186 GCGCCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCG 1644127
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| || || ||| || ||||| || || ||| |||||| |||||||| || ||
Sbjct 1644126 GACAGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGG 1644067
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| ||||||||||||||| ||| || ||||| | |||| ||||| | |||
Sbjct 1644066 GGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGACTCC 1644007
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115
|| || | ||| | || ||||| ||||| || || || || ||||||||||
Sbjct 1644006 ACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGG 1643955
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || ||||| ||| | ||||| ||| || ||||| || |||
Sbjct 662917 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 662976
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||||| |||||||| || || || ||||||||||||||| || || ||||
Sbjct 662977 GCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGCTCTTG 663036
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||| | |||||| |||| || | || |||||||| || ||
Sbjct 663037 ACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTC 663096
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||| || |||||
Sbjct 663097 TTGACAAAGATTTGCAT 663113
>seq11
Length=5116797
Score = 111 bits (122), Expect = 1e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| ||| |
Sbjct 2814746 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2814805
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| || ||| || ||||| || ||||| |||||| |||||||| || || ||
Sbjct 2814806 AGCGTCCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 2814865
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||||| ||||||
Sbjct 2814866 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCCGAGGACTCGACC 2814925
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
|||| ||| | || ||||| || || || || || |||
Sbjct 2814926 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 2814964
>seq42
Length=705881
Score = 96.9 bits (106), Expect = 3e-15
Identities = 163/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 47343 GACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAA 47402
||||| ||| ||| || ||| |||||| |||||| | | |||||||||||
Sbjct 321599 GACATTATTGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCTCTGCCGTGT 321540
Query 47403 TCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGC 47462
|| | |||| |||||| | | |||| ||||||| || ||||| ||||||||
Sbjct 321539 GCTCTGCTGGGCATGAACTCCACCCTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGT 321480
Query 47463 CTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATG 47522
||||| || || | |||| | |||| || || || ||||| ||||||
Sbjct 321479 CTGCTGGTCGCCCTCGGCAACGACAAGGTGTACCGTTCCACCAACCCCTTCGACTTTATG 321420
Query 47523 AACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
| ||||| || || | |||||||||||||| || |||||||||||||| || ||
Sbjct 321419 GAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTA 321364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500544418320
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