Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq22 107 2e-18
>seq22
Length=1908885
Score = 107 bits (118), Expect = 2e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || |||||||| | | ||| || || || || || ||||| ||||| || || |||
Sbjct 663112 ATACCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 663171
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| | || ||||| || || || || | |||| || |||||||| |||
Sbjct 663172 GAGAGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGC 663231
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| ||||| || || || ||||| || |||| || | || | ||| |||||||||||
Sbjct 663232 GGGATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCAATGGTATCGGAAGACTC 663290
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || || || | || |||||||| || || || || || || |||||
Sbjct 663291 GACCTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341
Score = 100 bits (110), Expect = 3e-16
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || || || | || ||| || |||||||| || ||||| || || || || || |
Sbjct 662431 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCC--G 662488
Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231
|| | | | ||| ||||| || || || ||| | |||| || |||||||| ||||
Sbjct 662489 ACAGCGTCCGGCCATCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCG 662548
Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290
||||||| || || || ||||| || |||| || | || | ||||| ||||| ||
Sbjct 662549 GAATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGTTGTCGATTGTGTCCGAAGATTCC 662607
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || |||| ||| || || || || || || || ||||| |||||
Sbjct 662608 ACTTCCAGCGTAATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452002957048280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |