Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq41 167 4e-36 >seq41 Length=3900177 Score = 167 bits (184), Expect = 4e-36 Identities = 338/491 (69%), Gaps = 8/491 (2%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGC-TTCTCAGATAGTACATGCCGGT 203901 || ||||||||||| || | | ||||| |||||| | | ||| ||||||||||| || Sbjct 916947 TCGACCGTGAACTGGATCGGCTGTGCGGCA-GCCTGCGTGCGCAGGTAGTACATGCCCGT 917005 Query 203902 CTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 ||| |||||| || ||| ||||| | ||||||| | | |||| || | | || | Sbjct 917006 CTTCAGGCCCAGCTTCCAGCCCGT-GAAGTGCATGCTCGTGATCTTGCCCATGGTCGGCT 917064 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 | |||||| |||||||| ||||| |||||||| |||||| || || || || ||| Sbjct 917065 CACGCATGTGGATGTTCAGCGACTGCGACTGGTCGAT-AAAGGCACCACGGTCCGCAGCC 917123 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 || | | ||| ||| ||| || |||||||||||||||||| ||| | || ||| | Sbjct 917124 ATCTGCACAATCGTCCGCTGAGAGATCTCCCACACCGTCTTGTACAGAGCCTTGATGTCT 917183 Query 204080 TGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 || | | | | || || |||||| ||||| ||||| || | | || || | Sbjct 917184 GCCGGGATGT-TGGGAATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTCTTCAT 917242 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 | ||| ||||| |||| || ||| ||| | ||| ||||||| | ||| Sbjct 917243 GTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTG 917302 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || || |||| |||||| | || | | | | |||| ||| | || ||||| ||| Sbjct 917303 GAACTCACCGGCCAGCACACGCCGCGAGTAAATGTTGGATGTGTACGGCTCGAAGCACTC 917362 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||||||||| | |||||| | || ||||| ||||| || |||| ||||| ||| Sbjct 917363 GTTGTTGCCCAGAATCTGTGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTT 917422 Query 204319 GCGCACACCGT 204329 ||||||||||| Sbjct 917423 GCGCACACCGT 917433 Score = 136 bits (150), Expect = 6e-27 Identities = 581/901 (64%), Gaps = 28/901 (3%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTC--ACCACCCCCACATGCTGCTGGTTA 204940 ||| || ||||| ||||||||||| || || | | |||| | || |||||| Sbjct 917906 CTCGACAATCTCCGTGCACAAGTT--CGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTG 917963 Query 204941 GACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGAT 205000 ||||||||| ||| ||||||||| | |||||| || | || ||||| |||| | Sbjct 917964 CTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCC 918023 Query 205001 CGCAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTGCTTCACGTACATCCCTTG 205056 ||||||| ||||| | | |||| | ||||| | || | |||| | Sbjct 918024 TCCAGAATGGCATACCACAGCTTCTGGGCCTTGATCTTCTTGCGAC-CG--CGACCCTCG 918080 Query 205057 AGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGG 205116 | ||||||||| |||||| ||| |||| || ||||| || ||| || | Sbjct 918081 CG-CTCGTATTTCTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCGGC 918139 Query 205117 ACATTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACA 205175 |||| ||||| |||||||| | |||| | | || ||| ||| | || ||| |||| Sbjct 918140 GCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTC-CACACGCTTCATGAACA 918198 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 ||||| |||||| || || || ||||||||||| | | | || | || ||| Sbjct 918199 GGTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGT 918258 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCAATG---TCGGCGTGCCACGGCTCTAACCACACGG 205292 |||| || ||| || | | ||| | ||||| ||||||||||| || | | | Sbjct 918259 TCTTCCGCAGGTCGAGGAA---CTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATGC 918315 Query 205293 CCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAA 205352 | ||| || |||| |||||| |||||||| ||||| ||| | | | |||||| | Sbjct 918316 AGAATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGA 918375 Query 205353 CTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTT 205412 | || ||||| || | | ||||||| || ||||| |||| | ||| ||||| Sbjct 918376 CACGAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGG 918435 Query 205413 CAGCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGC 205470 ||| | | || |||| || | || || || |||| ||||| |||| ||| Sbjct 918436 TAGCACGAATGCGATGGACAT--TCAGACCGATGCCACCAGCCGTCTTGGAGATCATGGC 918493 Query 205471 GCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGA 205528 ||| ||||| || ||| ||||||||| | ||| ||| ||| || |||| || || Sbjct 918494 ACACGTCTTG-AGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCA-TGTCTACGAGG 918551 Query 205529 TAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGG 205588 |||| || | ||||| || | ||||| |||| ||| ||||| || ||| || Sbjct 918552 AAGCAGGAGGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATGC 918611 Query 205589 CTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCG 205648 | ||| ||| | || | |||| ||||| | || | ||||| ||| ||| Sbjct 918612 GTAAAGAACTTGTTCGACATGTAGTTGTATGTCTCGACAACACGCTCCACATCATCGCCC 918671 Query 205649 TGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTC 205708 ||||| | ||| | | ||| | | ||| || || | ||| | | | | | | Sbjct 918672 CAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTACCATCG 918731 Query 205709 ACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTAGTCC 205768 | |||||| || |||| | ||| ||||| || | |||| | | | || || ||||| Sbjct 918732 AGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCC 918791 Query 205769 C 205769 | Sbjct 918792 C 918792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154772604080