Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq22 158 1e-33 seq11 120 3e-22 >seq22 Length=1908885 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||||| ||||| ||||||||||| || || || | Sbjct 1644171 CGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCA 1644112 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||||||| | || | || ||||||| Sbjct 1644111 TCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 1644052 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| |||||| | | | |||||| ||| ||||| || | ||||| Sbjct 1644051 TCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATA 1643992 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||||||| || || || ||||| ||||| Sbjct 1643991 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1643957 Score = 156 bits (172), Expect = 5e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| ||||||||||| || ||||| | || ||| Sbjct 662905 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 662964 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || |||| |||||||||||| | ||| | || |||||||||| Sbjct 662965 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGA 663024 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||||| | | | ||||||| ||| || || || | |||||||| ||| Sbjct 663025 ATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTG 663084 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || |||||||||||||| Sbjct 663085 CCGGTGAGTGTCTTGACAAAGATTTGCAT 663113 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| |||| || |||||| ||||| |||||||| || || || || | Sbjct 662670 ACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGACAGTGTCCGGCC 662729 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| ||||| |||| |||||||||||||| || | | |||||| Sbjct 662730 GTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTT 662789 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||||||| ||| | ||| | | | ||||| ||| || || |||| ||| | Sbjct 662790 GTCTTGGATCTTCGACTTTA-CGTTGTCGATTGTGTCAGACGACTCAACTTCCAACGTAA 662848 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| || || || || |||||||||||||| Sbjct 662849 TCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 Score = 138 bits (152), Expect = 1e-27 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || | | ||||| |||||| |||| || |||||| || || ||||| Sbjct 662424 TTACTGGCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTA 662483 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || || || || | || || | ||||||||| ||||| |||| |||||||||||| Sbjct 662484 GTCCGACAGCGTCCGGCCATCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTC 662543 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | ||| | || |||||||||| |||||| ||||| ||| | | | ||||| | Sbjct 662544 AGGCGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGTTGTCGATTGTGTCCGAAG 662602 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| |||| ||| || || || |||||||| || || || || || ||||| Sbjct 662603 ATTCCACTTCCAGCGTAATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| || | || |||||| ||||| ||||||||||| || ||||| | Sbjct 663126 ACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACC 663185 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | ||||||||| || || |||| |||||||||||| | ||| | || |||||| Sbjct 663186 GTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTT 663245 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||| ||||| ||| | | | || ||| || || || || | |||| Sbjct 663246 GTCCTGAATCTTGGACTTGA-CGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGTGA 663304 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || ||||| || || ||||| ||||| Sbjct 663305 TGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341 >seq11 Length=5116797 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||||| || || || | || || Sbjct 2814763 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTC 2814822 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| || || |||| ||||||||||| | ||| | || |||||||||| Sbjct 2814823 GAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 2814882 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| |||||| | | | ||||| || || || || | |||||||| || Sbjct 2814883 GATCTTGCTCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTT 2814942 Query 46564 GCCCGTCAGCGTTTTAACAAA 46584 |||||| || || || || || Sbjct 2814943 GCCCGTGAGGGTCTTCACGAA 2814963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238096184360