Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq42 179 4e-40 seq22 138 1e-27 seq11 116 4e-21 >seq42 Length=705881 Score = 179 bits (198), Expect = 4e-40 Identities = 330/480 (69%), Gaps = 8/480 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || ||| ||| ||| | |||||| || ||||||||| Sbjct 321379 TTCTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATAAAGTCGAAGGGGTTG 321438 Query 132685 GCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||| |||| |||||| || |||| ||||| | |||||| || ||| Sbjct 321439 GTGGAACGGTACACCTTGTCGTTGCCGA---GGGCGACCAGCAGACGGTCGGCAACAAAC 321495 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTC 132800 || ||||| ||| |||| | | || | ||||||||| |||| |||||| || || Sbjct 321496 TCAATGTACTGCTTCATGAGGGTGGAGTTCATGCCCAGCAGA-GCACACGGCAGAGCCTC 321554 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 || || || ||||| || ||| || ||| | || ||| | | | Sbjct 321555 CGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACAATAATGTCCTGGATCATCTGCTT 321614 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 |||||| || | || || ||||| || ||| ||||||||| |||| ||||| Sbjct 321615 GCTCGGGCGGTTGTTCAGGTGGGAGAACAGCAGGCAGGCAAAGTCGGTGTGCAGCCCCTC 321674 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 ||| | |||||| || || ||| |||||||| || ||||| ||||| || || ||||| Sbjct 321675 GTCGCGGGAAATCAGCTCATTGGAGAAAGTCAGACCAGGCATCAGGCCACGCTTCTTGAG 321734 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| | ||| ||| ||||| | |||||| ||||| ||||| ||||| Sbjct 321735 CCAGAAGATGGAAGAGAAGGCGCCGCTGAAGAAAATGCCCTCAACGGCAGCGAATGCCAC 321794 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 ||||||| | || |||| || ||| || ||||||||||| ||||| |||||||| Sbjct 321795 GAGGCGCTGCGCAAAGGTGGACTCCTTGTCAGCAATCCAGCGCAGAGCCCAGTCGGCCTT 321854 Score = 176 bits (194), Expect = 5e-39 Identities = 207/277 (75%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| ||||| || ||| | |||||||| | ||||||||| ||| || || Sbjct 321978 GTAGGTGTCAATGAGCAGAGAGTACGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAA 322037 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285 ||| || ||||| || ||||| |||||| || || | || ||| |||||||| || | Sbjct 322038 GCCATAGAAGCAGCGAGCCTCAGGCACCTGGACCTCA-GCGCTGAAGCGCTCGACGAGGT 322096 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | |||||||||||||| || ||| ||||| ||||| || | ||| |||||| | Sbjct 322097 TCTCGTTGACGATGCCATCAGAGGCAGCGAAGAAGGCGAGAATGTGGGAGATGAAGAAAC 322156 Query 133346 GCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||||| |||||||| ||| | ||||||| || |||||||||||| || | ||||| Sbjct 322157 GCTCGTCGTCGTTCAGGCGGTTGTGCCAGTCGTGCAGGTCCTTGGACAGATCAATCTCCT 322216 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || | ||||| || || |||||| || |||||||| Sbjct 322217 CGGCCGTCCAGAAGGAAGCCTCGTGCTTCTTGTACAT 322253 >seq22 Length=1908885 Score = 138 bits (152), Expect = 1e-27 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| ||||| || || || | || || ||| | | Sbjct 662885 ATGCAAATCTTTGTCAAGACACTCACCGGCAAGACGATTACGTTGGAAGTTGAGTCGTCT 662826 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| ||||| || |||| ||||| ||||| || || |||||| Sbjct 662825 GACACAATCGACAACG--TAAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACC 662768 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||||||||| |||||||| |||| || || || ||||||| Sbjct 662767 AGCAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGGACACTGTCTGACTACA 662708 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||||||||| |||||||||||| || | || || Sbjct 662707 ACATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 662659 Score = 131 bits (144), Expect = 2e-25 Identities = 163/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| ||||||||| | || |||||| | || Sbjct 663341 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCC 663282 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 || | | | | |||| | || || || | ||||| ||||| || |||||| |||| Sbjct 663281 GATACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCAT-CCCGCCAGACC 663224 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| ||| |||| |||| ||||||||| |||||||| Sbjct 663223 AGCAGCGCCTGATCTTTGCTGGCAAGCAGTTGGAGGACGGTCGCACCCTCTCCGACTACA 663164 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| | || || || ||||||| ||| Sbjct 663163 ACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGT 663126 Score = 129 bits (142), Expect = 6e-25 Identities = 163/218 (75%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || |||||| | || || ||| | || Sbjct 1643957 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 1644016 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | || | | |||| || |||| ||||| ||||| |||||| | |||| Sbjct 1644017 GACACTATCGACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACC 1644074 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | || ||||| |||||||| Sbjct 1644075 AGCAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGACTACA 1644134 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| ||| ||||| || |||||||||| Sbjct 1644135 ACATCCAGAAGGAGAGC-ACGCTCCACCTGGTGCTGCG 1644171 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| ||||| | ||||| ||||| || |||| ||||||||| ||| |||| Sbjct 662564 GACAAGGAGGGCATTCCGCCTGACCAGCAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAA 662505 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | || || || ||||||||||| || ||||| |||||||||| |||||||| Sbjct 662504 GATGGCCGGACGCTGTCGGACTACAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTG 662445 Query 38457 CGTTTGAGAGGCGGCC 38472 ||| || | ||||||| Sbjct 662444 CGTCTGCGTGGCGGCC 662429 Score = 111 bits (122), Expect = 2e-19 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| ||||| |||||||| |||| |||||| | || Sbjct 663113 ATGCAAATCTTTGTCAAGACACTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 663054 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| || | | | |||| || || | ||||| ||||| || |||||| |||| Sbjct 663053 GACA-CGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCAT-CCCGCCAGACC 662996 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| ||||| || || | |||||||| |||||||| Sbjct 662995 AGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACA 662936 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| | || || || |||| || || Sbjct 662935 ACATCCAGAAGGAGTCTACTCTCCACCTGGTTCTCCG 662899 >seq11 Length=5116797 Score = 116 bits (128), Expect = 4e-21 Identities = 155/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 2814963 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 2814904 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGG 38369 | || | | |||| || |||| ||||| ||||| || |||||| ||||| ||||| Sbjct 2814903 GACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACCAGCAGCGT 2814847 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 || || | || ||||| ||||| || || | || || || ||||||||||||||| Sbjct 2814846 CTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAG 2814787 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| | || || || ||||||| || Sbjct 2814786 AAGGAGTCCACCCTCCACCTGGTGCTCCG 2814758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172531157120