Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq41 233 2e-56
seq11 91.5 2e-13
>seq41
Length=3900177
Score = 233 bits (258), Expect = 2e-56
Identities = 428/626 (68%), Gaps = 6/626 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||| ||| || || || || || | ||||| || ||||||||
Sbjct 662821 TCGAAGTCCTCACCACCCAGGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 662880
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | | || ||||| || ||||||||||||||||| || || || |||
Sbjct 662881 TCCTCAATGGTCAGGAGAGACACATCGAAAGTACCACCACCCAGGTCGAAGATCAGGACG 662940
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | || ||||| ||||||||||| || || || || ||||| || ||
Sbjct 662941 TTGCGCTCGCCCTCAACCTTCTTGTCGAGACCGTAGGCAATGGCAGCGGCCGTGGGCTCG 663000
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || ||||| || ||| || || ||||| | || || || || || || ||
Sbjct 663001 TTGATGATACGCAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTGGCCTGACGC 663060
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || ||||| ||||||||||| || || | ||| |||| |||| | ||||||
Sbjct 663061 TGAGAGTCGTTGAAGTAGGCCGGAACGGTGATGACAGCGTTGTTGACGGTGCCACCGAGG 663120
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || ||| | || ||| ||||| || ||||| || ||||| || || | |
Sbjct 663121 TAGGACTCAGCGGTCTCGCGCATCTTGGTCAGGACCATGGAGGAAATTTCCTCGGGGGTG 663180
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876
||||| ||| | || || || || || || || | ||||| || |||| |
Sbjct 663181 AACTGCTTCTTCTCGCCCTTGAACTCGACCTCGACAATGGGCTT---GCCAGCCTTGTCA 663237
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
|| | ||| | | | | |||||||| | ||||||| ||| | ||||| |
Sbjct 663238 ATGATCTTGAAGGGGAAGTGCTTCATATCCGCCTGGACCTCAGCGTCGGCGAACTTGCGG 663297
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
|| || || ||||| || || || || ||||| | |||||||||||| ||||||||
Sbjct 663298 CCAATGAGCCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTG 663357
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| ||||| || || | || || | |||||||| || ||| | || || || ||
Sbjct 663358 GCGGCGTCACCAATCAACCGCTC---CGTGTCCGTAAAGGCCACGAAGGACGGTGTGGTG 663414
Query 8057 CGATTCCCTTGGTCGTTCGCAATAAT 8082
|| || || ||||| || || || ||
Sbjct 663415 CGGTTACCCTGGTCATTGGCGATGAT 663440
Score = 147 bits (162), Expect = 3e-30
Identities = 361/543 (66%), Gaps = 11/543 (2%)
Strand=Plus/Plus
Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATA--GAAATCAACGCCGTCGTATAACG 7301
|| ||||| ||||| |||||||| || || || ||| || ||||||| | | ||
Sbjct 3423648 AGCTCCTCGAAACGGGCACGGGTGATC--TGCATGCTGAAGTCCTCGCCGTCAAAAAGCG 3423705
Query 7302 AATCAATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACA 7359
| || || || ||||| | || ||||| | || | ||| ||||| || ||||| ||
Sbjct 3423706 AGTCGATCTCGATGGTGGCCTGGGTGCCGCTG--GACAGCGTCCGCTTGGCACGCTCGCA 3423763
Query 7360 CGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACG 7419
||||| || | |||||| |||||||||| | || || | || ||||| || ||
Sbjct 3423764 GGCCGTGCGCAGACGACGCAGGGCACGCGCATCGCCAGACAGGTCCTTCTTGGTCTTGCG 3423823
Query 7420 TTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTG 7479
|| || | | |||| || || | | || || || | ||||||| ||
Sbjct 3423824 GAGGAAGTCCTTCTTGCAGTGGTCCAGCAGGTTGGTGTCAAAGTCCTGGCCACCCAGATG 3423883
Query 7480 TGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAAC 7539
|| || || || || || ||||| |||| ||| || | ||||| | | || ||
Sbjct 3423884 GGTGTCACCAGCAGTGGCCTTGACGGTGAAGACACCGCCCTGGATGTTCAGGAGAGACAC 3423943
Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT 7599
||| || |||||||||||||| || | || || ||||| || | | | ||
Sbjct 3423944 ATCGAAAGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTGGCAGACTTGCC 3424003
Query 7600 ATCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656
| | |||||||| || ||||| || ||||| || || || || ||||| ||| |||
Sbjct 3424004 AGAGCCCAGACCGTAGGCAATAGCGGCAGCCGTCGGCTCGTTGATGATACGCAGAACGTT 3424063
Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716
|||||||| ||| | | || || || |||| || || || ||||| ||||||||
Sbjct 3424064 CAGGCCAGAAATGGCACCGGCGTCCTTGGTCGACTGACGCTGGTTGTCGTTGAAGTAGGC 3424123
Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776
||||||||| | ||| || | | || ||||| |||| | | ||| || || || ||
Sbjct 3424124 CGGGACCGTGATGACGGCCTTCTCAACCTTCTTGCCGATCTTGGCTTCGGCAATCTCCTT 3424183
Query 7777 CAT 7779
|||
Sbjct 3424184 CAT 3424186
>seq11
Length=5116797
Score = 91.5 bits (100), Expect = 2e-13
Identities = 181/266 (68%), Gaps = 9/266 (3%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||||| ||| || || || || ||||| || || || | ||
Sbjct 1200402 TCGAAATCCTCACCACCCAGGTGGGTGTCACCAGCCGTCGCGAGAACCTCGAACACGCCC 1200343
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA---AATGAGT 7573
|| ||| | || || ||||| || ||||| ||||| ||||| | |||||
Sbjct 1200342 TGGTCGATGGAAAGCAGGGACACATCGAAAGTACCGCCACCAAGGTCGTACACAATGATC 1200283
Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633
| | ||| |||| | |||| || |||||||| || || || ||||| || ||
Sbjct 1200282 TGGCGC---TCGCCGTC---GGTCTTGTCCAGACCGTAGGCAATGGCGGCCGCGGTGGGC 1200229
Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693
|| || | ||||| ||| |||||||||||| || | | || || || || || ||
Sbjct 1200228 TCGTTGACGATACGCAGAACGTTCAGGCCAGCGATGATACCGGCGTCCTTGGTAGCCTGG 1200169
Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGG 7719
|| || ||||| |||||||||||
Sbjct 1200168 CGCTGGTTGTCGTTGAAGTAGGCCGG 1200143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132458616120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |