Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq41 233 2e-56 seq11 91.5 2e-13 >seq41 Length=3900177 Score = 233 bits (258), Expect = 2e-56 Identities = 428/626 (68%), Gaps = 6/626 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||| ||| || || || || || | ||||| || |||||||| Sbjct 662821 TCGAAGTCCTCACCACCCAGGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 662880 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||||||||| || || || ||| Sbjct 662881 TCCTCAATGGTCAGGAGAGACACATCGAAAGTACCACCACCCAGGTCGAAGATCAGGACG 662940 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| ||||||||||| || || || || ||||| || || Sbjct 662941 TTGCGCTCGCCCTCAACCTTCTTGTCGAGACCGTAGGCAATGGCAGCGGCCGTGGGCTCG 663000 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || ||||| | || || || || || || || Sbjct 663001 TTGATGATACGCAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTGGCCTGACGC 663060 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| ||||||||||| || || | ||| |||| |||| | |||||| Sbjct 663061 TGAGAGTCGTTGAAGTAGGCCGGAACGGTGATGACAGCGTTGTTGACGGTGCCACCGAGG 663120 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| ||||| || ||||| || ||||| || || | | Sbjct 663121 TAGGACTCAGCGGTCTCGCGCATCTTGGTCAGGACCATGGAGGAAATTTCCTCGGGGGTG 663180 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 ||||| ||| | || || || || || || || | ||||| || |||| | Sbjct 663181 AACTGCTTCTTCTCGCCCTTGAACTCGACCTCGACAATGGGCTT---GCCAGCCTTGTCA 663237 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || | ||| | | | | |||||||| | ||||||| ||| | ||||| | Sbjct 663238 ATGATCTTGAAGGGGAAGTGCTTCATATCCGCCTGGACCTCAGCGTCGGCGAACTTGCGG 663297 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || || ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 663298 CCAATGAGCCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTG 663357 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||| || || | || || | |||||||| || ||| | || || || || Sbjct 663358 GCGGCGTCACCAATCAACCGCTC---CGTGTCCGTAAAGGCCACGAAGGACGGTGTGGTG 663414 Query 8057 CGATTCCCTTGGTCGTTCGCAATAAT 8082 || || || ||||| || || || || Sbjct 663415 CGGTTACCCTGGTCATTGGCGATGAT 663440 Score = 147 bits (162), Expect = 3e-30 Identities = 361/543 (66%), Gaps = 11/543 (2%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATA--GAAATCAACGCCGTCGTATAACG 7301 || ||||| ||||| |||||||| || || || ||| || ||||||| | | || Sbjct 3423648 AGCTCCTCGAAACGGGCACGGGTGATC--TGCATGCTGAAGTCCTCGCCGTCAAAAAGCG 3423705 Query 7302 AATCAATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACA 7359 | || || || ||||| | || ||||| | || | ||| ||||| || ||||| || Sbjct 3423706 AGTCGATCTCGATGGTGGCCTGGGTGCCGCTG--GACAGCGTCCGCTTGGCACGCTCGCA 3423763 Query 7360 CGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACG 7419 ||||| || | |||||| |||||||||| | || || | || ||||| || || Sbjct 3423764 GGCCGTGCGCAGACGACGCAGGGCACGCGCATCGCCAGACAGGTCCTTCTTGGTCTTGCG 3423823 Query 7420 TTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTG 7479 || || | | |||| || || | | || || || | ||||||| || Sbjct 3423824 GAGGAAGTCCTTCTTGCAGTGGTCCAGCAGGTTGGTGTCAAAGTCCTGGCCACCCAGATG 3423883 Query 7480 TGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAAC 7539 || || || || || || ||||| |||| ||| || | ||||| | | || || Sbjct 3423884 GGTGTCACCAGCAGTGGCCTTGACGGTGAAGACACCGCCCTGGATGTTCAGGAGAGACAC 3423943 Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT 7599 ||| || |||||||||||||| || | || || ||||| || | | | || Sbjct 3423944 ATCGAAAGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTGGCAGACTTGCC 3424003 Query 7600 ATCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 | | |||||||| || ||||| || ||||| || || || || ||||| ||| ||| Sbjct 3424004 AGAGCCCAGACCGTAGGCAATAGCGGCAGCCGTCGGCTCGTTGATGATACGCAGAACGTT 3424063 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 |||||||| ||| | | || || || |||| || || || ||||| |||||||| Sbjct 3424064 CAGGCCAGAAATGGCACCGGCGTCCTTGGTCGACTGACGCTGGTTGTCGTTGAAGTAGGC 3424123 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 ||||||||| | ||| || | | || ||||| |||| | | ||| || || || || Sbjct 3424124 CGGGACCGTGATGACGGCCTTCTCAACCTTCTTGCCGATCTTGGCTTCGGCAATCTCCTT 3424183 Query 7777 CAT 7779 ||| Sbjct 3424184 CAT 3424186 >seq11 Length=5116797 Score = 91.5 bits (100), Expect = 2e-13 Identities = 181/266 (68%), Gaps = 9/266 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||| ||| || || || || ||||| || || || | || Sbjct 1200402 TCGAAATCCTCACCACCCAGGTGGGTGTCACCAGCCGTCGCGAGAACCTCGAACACGCCC 1200343 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA---AATGAGT 7573 || ||| | || || ||||| || ||||| ||||| ||||| | ||||| Sbjct 1200342 TGGTCGATGGAAAGCAGGGACACATCGAAAGTACCGCCACCAAGGTCGTACACAATGATC 1200283 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | | ||| |||| | |||| || |||||||| || || || ||||| || || Sbjct 1200282 TGGCGC---TCGCCGTC---GGTCTTGTCCAGACCGTAGGCAATGGCGGCCGCGGTGGGC 1200229 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | ||||| ||| |||||||||||| || | | || || || || || || Sbjct 1200228 TCGTTGACGATACGCAGAACGTTCAGGCCAGCGATGATACCGGCGTCCTTGGTAGCCTGG 1200169 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGG 7719 || || ||||| ||||||||||| Sbjct 1200168 CGCTGGTTGTCGTTGAAGTAGGCCGG 1200143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132458616120