Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq41 165 1e-35
seq42 100 4e-16
>seq41
Length=3900177
Score = 165 bits (182), Expect = 1e-35
Identities = 931/1465 (64%), Gaps = 43/1465 (3%)
Strand=Plus/Minus
Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605
|| ||||| |||||||||| ||| |||||||| | || |||||| | |
Sbjct 918775 TACTTTGGCTTCAAGACCCTGGAGCGGTCCTACCTCCTCAAGCTCGATGGTAAGATCGTC 918716
Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665
|| || ||| ||||| | ||||| || || | |||||| || || ||| | ||
Sbjct 918715 GAGCGGCCGCAGCACATGATTATGCGCGTGGCCGTTGGTATCTGGGGCGATGATGTGGAG 918656
Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725
|||| | ||||||||| || | ||||| | || | || || | || ||
Sbjct 918655 CGTGTTGTCGAGACATACAACTACATGTCGAACAAGTTCTTTACGCATGCCTCGCCGACG 918596
Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785
|| |||||||| || || || | || ||||| || ||||| | | | |||
Sbjct 918595 CTTTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCCTCCTGCTTCCTCGTAGACATGAAG 918536
Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845
|| ||| || | ||||| |||| ||| |||| |||||| ||||| ||| |
Sbjct 918535 GATGATAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACG 918476
Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGT 111905
|||||||| ||||| || | ||||| | | || | | ||| ||| ||
Sbjct 918475 GCTGGTGGCATCGGTCTGAATGTCCATCGCATTCGTGCTACCGGCTCTTACATTGCCGGC 918416
Query 111906 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965
|| || || ||| | || || || || |||||||| || || ||| ||| || |||
Sbjct 918415 ACTAACGGCACATCCAACGGCATCATCCCCATGCTTCGTGTCTTCAACAACACGGCCCGC 918356
Query 111966 TATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019
|| || | || | ||| ||| | | | || | | ||| |||| | |||||
Sbjct 918355 TACGTGGATCAGGGTGGCAACAAGCGGCCCGGTGCAT-TCT-GCA-TCTACTTGGAGCCG 918299
Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079
||||| || ||| || | |||||||| || |||| |||||||| | |||||||
Sbjct 918298 TGGCATGCCGATGTCTTTGAGTTCCTCGACCTGCGGAAGAACCAAGGCAAGGAGGAGGTC 918239
Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139
|| ||| ||||| ||| ||| |||||||| || || || ||||||||| | || |||
Sbjct 918238 CGTGCCCGTGATCTTTTCCTCGCACTCTGGATCCCCGACCTGTTCATGAAGCGTGTGGAG 918179
Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGT 112198
||| ||| | ||| | || | || || || || || || || || | ||| |
Sbjct 918178 AAGAACGGCGAGTGGACGCTGATGTGCCCCAACGAATGCGCC-GGCCTGGCTGATTGCTA 918120
Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--G 112256
|| ||||||||||| || || ||| || |||||| || ||| ||| || |
Sbjct 918119 CGGCGAGGAGTTTGAGGCTCTGTACGAGAAATACGAGCGCGAGGGTC--GCGGTCGCAAG 918062
Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315
| | | | || | || | ||||| | || ||||| || | || || ||||| || |
Sbjct 918061 AAGAT-CAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAGGCGCAGACGGAGACGGGCAA 918003
Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375
|| | ||||| ||||| ||| ||| |||| ||||| || || ||||| |||||
Sbjct 918002 CCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTAC 917943
Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435
||| || || ||| | || || || || | || | | | || ||| |||
Sbjct 917942 CATCCGCAGCTCGAACTTGTGCACGGAGATTGTCGAGTACTCGGCTCCGGACGAGGTGGC 917883
Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGACA 112493
|||||| ||| | || || | ||||| || | || || | | | |||| || |
Sbjct 917882 TGTGTGCAACTTGGCCTCTTTGGCTCTTCCGTCTTTCGTCGA-CTATA-ACAACGAGTCG 917825
Query 112494 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTT 112553
| ||| | | | ||| ||||| || ||| | || ||||| ||| | |
Sbjct 917824 TATGACTTCCAGAGACTGCACGATGTCACGCAGCTGGTTGTCCGCAACCTGAACCGCATC 917765
Query 112554 ATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612
|||||| || | ||||| || ||| || || || ||| ||| | ||||||||
Sbjct 917764 ATTGATGTCAACTACTACCCTGTGCCAGA-AGCACGGAACAGTAACATGCGCCACCGTCC 917706
Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA----- 112667
|||||||| ||||| || ||||| ||||| | ||| || ||| ||||
Sbjct 917705 CATTGGTCTGGGTGTGCAGGGTCTGGCGGACGCCTTC-----CTGGCGCTGCGCATGCCC 917651
Query 112668 TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCC 112727
||||| || ||| || | || || | |||||||| || || |||||
Sbjct 917650 TTTGAGTCTCCCGAGGCACGCCTGCTGAACAAGCAGGTCTTTGAGACCATCTACCACGCG 917591
Query 112728 GCTCTTGAGGCGAGT--TCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGG 112785
|| | ||| | |||| | ||| |||| || |||| || | || | || | |||||
Sbjct 917590 GCGC-TGACG-GAGTCGTGCGAGCTGGCCAAGATTGAGGGCACCTACCAGACATATGAGG 917533
Query 112786 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-AGCTT 112844
| ||||| | || || || | || || || ||||||| | || | ||| |
Sbjct 917532 GGTCTCCTGTGTCGCAGGGTATTCTGCAGCCCGACATGTGGG-ATGTCACGCCATCGGAC 917474
Query 112845 CACTACGACTGGGACGCTCTCAAG--GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 112902
| | || |||||| | || | ||| ||||||||| | ||| | || |||||||
Sbjct 917473 CTGTGGGATTGGGACTCGCTGCGGCTGAA--GATCAAGGAGCACGGTGTGCGCAACAGTC 917416
Query 112903 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 112962
| || |||| || ||||| || || || || |||| || |||| || || || ||||
Sbjct 917415 TGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCACAGATTCTGGGCAACAACGAGTGCT 917356
Query 112963 TTGAACCCTACACGACGAACATCTA 112987
| || || ||||| | ||||| ||
Sbjct 917355 TCGAGCCGTACACATCCAACATTTA 917331
>seq42
Length=705881
Score = 100 bits (110), Expect = 4e-16
Identities = 159/225 (71%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTC 102166
||| || || || | ||||| || || |||||| || ||| ||| | |||| ||||
Sbjct 321873 AGTCCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGCGCTGGATTGCTGACAAGGAGTC 321814
Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226
||||||| |||| ||| | ||||| || |||||||| || |||||| ||
Sbjct 321813 CA---CCTTTGCGCAGCGCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGG 321757
Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286
|||||| | || | |||||||||||||| || || ||||| ||||| |||||
Sbjct 321756 CGCCTTCTCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTC 321697
Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||| ||||| || || || |||||||| || ||| || |||||
Sbjct 321696 CAATGAGCTGATTTCCCGCGACGAGGGGCTGCACACCGACTTTGC 321652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620742066350960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |