Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq41 165 1e-35 seq42 100 4e-16 >seq41 Length=3900177 Score = 165 bits (182), Expect = 1e-35 Identities = 931/1465 (64%), Gaps = 43/1465 (3%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || ||||| |||||||||| ||| |||||||| | || |||||| | | Sbjct 918775 TACTTTGGCTTCAAGACCCTGGAGCGGTCCTACCTCCTCAAGCTCGATGGTAAGATCGTC 918716 Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 || || ||| ||||| | ||||| || || | |||||| || || ||| | || Sbjct 918715 GAGCGGCCGCAGCACATGATTATGCGCGTGGCCGTTGGTATCTGGGGCGATGATGTGGAG 918656 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725 |||| | ||||||||| || | ||||| | || | || || | || || Sbjct 918655 CGTGTTGTCGAGACATACAACTACATGTCGAACAAGTTCTTTACGCATGCCTCGCCGACG 918596 Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 || |||||||| || || || | || ||||| || ||||| | | | ||| Sbjct 918595 CTTTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCCTCCTGCTTCCTCGTAGACATGAAG 918536 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 || ||| || | ||||| |||| ||| |||| |||||| ||||| ||| | Sbjct 918535 GATGATAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACG 918476 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGT 111905 |||||||| ||||| || | ||||| | | || | | ||| ||| || Sbjct 918475 GCTGGTGGCATCGGTCTGAATGTCCATCGCATTCGTGCTACCGGCTCTTACATTGCCGGC 918416 Query 111906 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 || || || ||| | || || || || |||||||| || || ||| ||| || ||| Sbjct 918415 ACTAACGGCACATCCAACGGCATCATCCCCATGCTTCGTGTCTTCAACAACACGGCCCGC 918356 Query 111966 TATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 || || | || | ||| ||| | | | || | | ||| |||| | ||||| Sbjct 918355 TACGTGGATCAGGGTGGCAACAAGCGGCCCGGTGCAT-TCT-GCA-TCTACTTGGAGCCG 918299 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 ||||| || ||| || | |||||||| || |||| |||||||| | ||||||| Sbjct 918298 TGGCATGCCGATGTCTTTGAGTTCCTCGACCTGCGGAAGAACCAAGGCAAGGAGGAGGTC 918239 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || ||| ||||| ||| ||| |||||||| || || || ||||||||| | || ||| Sbjct 918238 CGTGCCCGTGATCTTTTCCTCGCACTCTGGATCCCCGACCTGTTCATGAAGCGTGTGGAG 918179 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGT 112198 ||| ||| | ||| | || | || || || || || || || || | ||| | Sbjct 918178 AAGAACGGCGAGTGGACGCTGATGTGCCCCAACGAATGCGCC-GGCCTGGCTGATTGCTA 918120 Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--G 112256 || ||||||||||| || || ||| || |||||| || ||| ||| || | Sbjct 918119 CGGCGAGGAGTTTGAGGCTCTGTACGAGAAATACGAGCGCGAGGGTC--GCGGTCGCAAG 918062 Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 | | | | || | || | ||||| | || ||||| || | || || ||||| || | Sbjct 918061 AAGAT-CAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAGGCGCAGACGGAGACGGGCAA 918003 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 || | ||||| ||||| ||| ||| |||| ||||| || || ||||| ||||| Sbjct 918002 CCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTAC 917943 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435 ||| || || ||| | || || || || | || | | | || ||| ||| Sbjct 917942 CATCCGCAGCTCGAACTTGTGCACGGAGATTGTCGAGTACTCGGCTCCGGACGAGGTGGC 917883 Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGACA 112493 |||||| ||| | || || | ||||| || | || || | | | |||| || | Sbjct 917882 TGTGTGCAACTTGGCCTCTTTGGCTCTTCCGTCTTTCGTCGA-CTATA-ACAACGAGTCG 917825 Query 112494 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTT 112553 | ||| | | | ||| ||||| || ||| | || ||||| ||| | | Sbjct 917824 TATGACTTCCAGAGACTGCACGATGTCACGCAGCTGGTTGTCCGCAACCTGAACCGCATC 917765 Query 112554 ATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612 |||||| || | ||||| || ||| || || || ||| ||| | |||||||| Sbjct 917764 ATTGATGTCAACTACTACCCTGTGCCAGA-AGCACGGAACAGTAACATGCGCCACCGTCC 917706 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA----- 112667 |||||||| ||||| || ||||| ||||| | ||| || ||| |||| Sbjct 917705 CATTGGTCTGGGTGTGCAGGGTCTGGCGGACGCCTTC-----CTGGCGCTGCGCATGCCC 917651 Query 112668 TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCC 112727 ||||| || ||| || | || || | |||||||| || || ||||| Sbjct 917650 TTTGAGTCTCCCGAGGCACGCCTGCTGAACAAGCAGGTCTTTGAGACCATCTACCACGCG 917591 Query 112728 GCTCTTGAGGCGAGT--TCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGG 112785 || | ||| | |||| | ||| |||| || |||| || | || | || | ||||| Sbjct 917590 GCGC-TGACG-GAGTCGTGCGAGCTGGCCAAGATTGAGGGCACCTACCAGACATATGAGG 917533 Query 112786 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-AGCTT 112844 | ||||| | || || || | || || || ||||||| | || | ||| | Sbjct 917532 GGTCTCCTGTGTCGCAGGGTATTCTGCAGCCCGACATGTGGG-ATGTCACGCCATCGGAC 917474 Query 112845 CACTACGACTGGGACGCTCTCAAG--GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 112902 | | || |||||| | || | ||| ||||||||| | ||| | || ||||||| Sbjct 917473 CTGTGGGATTGGGACTCGCTGCGGCTGAA--GATCAAGGAGCACGGTGTGCGCAACAGTC 917416 Query 112903 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 112962 | || |||| || ||||| || || || || |||| || |||| || || || |||| Sbjct 917415 TGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCACAGATTCTGGGCAACAACGAGTGCT 917356 Query 112963 TTGAACCCTACACGACGAACATCTA 112987 | || || ||||| | ||||| || Sbjct 917355 TCGAGCCGTACACATCCAACATTTA 917331 >seq42 Length=705881 Score = 100 bits (110), Expect = 4e-16 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTC 102166 ||| || || || | ||||| || || |||||| || ||| ||| | |||| |||| Sbjct 321873 AGTCCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGCGCTGGATTGCTGACAAGGAGTC 321814 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 ||||||| |||| ||| | ||||| || |||||||| || |||||| || Sbjct 321813 CA---CCTTTGCGCAGCGCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGG 321757 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 |||||| | || | |||||||||||||| || || ||||| ||||| ||||| Sbjct 321756 CGCCTTCTCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTC 321697 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| ||||| || || || |||||||| || ||| || ||||| Sbjct 321696 CAATGAGCTGATTTCCCGCGACGAGGGGCTGCACACCGACTTTGC 321652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742066350960