Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq41 264 1e-65
>seq41
Length=3900177
Score = 264 bits (292), Expect = 1e-65
Identities = 1113/1727 (64%), Gaps = 53/1727 (3%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
||||| |||||| ||||| ||||| || |||||| || || ||||| | | ||
Sbjct 917078 GTTCAGCGACTGCGACTGGTCGATAAAGGCACCACGGTCCGCAGCCATCTGCACAATCGT 917137
Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619
| || || ||||| || |||||||||| | |||||| || | || ||||
Sbjct 917138 CCGCTGAGAGATCTCCCACACCGTCTTGTACAGAGCCTTGATGTCTGCCGGGATGTTGGG 917197
Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCA 109676
||||| || || || ||| || | |||| | | |||||| | | ||||||
Sbjct 917198 AATGTTCTGGATCGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGTTGTCCGACCA 917254
Query 109677 GAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGC 109736
||||| | | || || | | || | ||||||||| || ||||| ||
Sbjct 917255 CAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCACCGGC 917314
Query 109737 AAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAG 109796
|| || || ||| ||||| | ||||| || ||||| ||||| |||||||| ||
Sbjct 917315 CAGCACACGCCGCGAGTAAATGTTGGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAG 917374
Query 109797 GATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTT 109856
|| |||| || || || || ||||| || |||| || |||||||| || | ||| |
Sbjct 917375 AATCTGTGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTG 917434
Query 109857 CGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACC 109916
| ||| | | | |||| | ||||||||| | | | | | | | | ||
Sbjct 917435 CTCCTTGATCTTCAGCCGCAGCGAGTCCCAATCCCACAGGTC-CGA----TGGCGTGAC- 917488
Query 109917 ATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTA 109976
||||||||| || || || || | ||||| | ||||||| |||| | ||| |||
Sbjct 917489 ATCCCACATGTCGGGCTGCAGAATACCCTGCGACACAGGAGACCCCTCATATGTCTGGTA 917548
Query 109977 CGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036
| ||||||| || ||||| |||| | || || || ||||| || || || |||||
Sbjct 917549 GGTGCCCTCAATCTTGGCCAGCTCGCACGACTCCGTCAGCGCCGCGTGGTAGATGGTCTC 917608
Query 110037 AAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA-A 110095
||| | || |||| ||||| | ||| | | || ||||| | | || | |
Sbjct 917609 AAAGACCTGCTTGTTCAGCAGGCGTGCCTCGGGAGACTCAAAGGGCATGCG-CAGCGCCA 917667
Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155
|| | ||||| |||||||| ||||| ||||||||||| || || ||||||| |
Sbjct 917668 GGAAGGCGTCCGCCAGACCCTGCACACCCAGACCAATGGGACGGTGGCGCATGTTACTGT 917727
Query 110156 GTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCG 110212
|| || |||| || ||||| ||||| || |||| || || || || |
Sbjct 917728 TCCGTGC---TTCTGGCACAGGGTAGTAGTTGACATCAATGATGCGGTTCAGGTTGCG-G 917783
Query 110213 TCA--CAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATT 110270
|| ||| || ||||| || || ||| | | | | || ||| | | | | |
Sbjct 917784 ACAACCAG-CTGCGTGACATCGTGCAGTCTCTGGAAGTCATACGACTCGTTGTTATAGTC 917842
Query 110271 GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGT 110330
||| | || ||||| | ||| || | |||||||||| |||||| | |
Sbjct 917843 GACGAAAGACGGAAGAGCCAAAGAGGCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGA 917902
Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390
||| || | ||| ||||| |||||||| || || ||| ||||| ||||||||| ||
Sbjct 917903 GTACTCGACAATCTCCGTGCACAAGTTCGAGCTGCGGATGGTACCCAGGTTCTTCTGGTT 917962
Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450
||| |||||| ||||| ||||||||| | ||| | || || |||||||| |
Sbjct 917963 GCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGC 918022
Query 110451 CTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG-TTGCGTTAGCGAGACCTTCC 110508
|| |||||||| | ||| | | || | | | | | ||||| | || |||| ||
Sbjct 918023 CTCCAGAATGGCATACCACAGCTTCTGGGCCTTGATCTTCTTGCG--ACCGCGACCCTCG 918080
Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTC 110568
|||||| || ||||| ||||||| |||| ||||| ||||| || || |
Sbjct 918081 CGCTCGTATTTCTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCGG-C 918139
Query 110569 GCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAG 110627
|| || || ||| || | || | ||| | || || ||| || | ||||||||||||
Sbjct 918140 GCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAG 918199
Query 110628 GTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTT 110687
||| || ||||| | || |||||| |||||| ||| |||| || | ||||||||
Sbjct 918200 GTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTT 918259
Query 110688 GAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA--CAGCG 110745
|| || || | || || | || ||| | ||||| || || | |||| |||
Sbjct 918260 CTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATGCAG-A 918318
Query 110746 ATGGATC---CCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACC 110802
||| | | || | | || |||| | || ||||| || ||| ||||||||
Sbjct 918319 ATGCACCGGGCCGCTTGTTG-CCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACA 918377
Query 110803 CTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTG 110862
| ||||| || || || || | |||| || || || || ||| || |
Sbjct 918378 CGAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTA 918437
Query 110863 GCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC 110922
||||||||| |||| || || ||| || ||||| ||| ||| || ||||||
Sbjct 918438 GCACGAATGCGATGGACATTCAGACCGATGCCACCAGCCGTCTTGGAGATCATGGCACAC 918497
Query 110923 -TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCA 110981
||| |||| || | || || || ||||| ||| |||| || | | || |||||
Sbjct 918498 GTCT-TGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGCA 918556
Query 110982 AGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041
|| |||| ||||| | ||||| || || ||||| || || || | ||||| | |
Sbjct 918557 GGAGGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATG--CGTA 918614
Query 111042 CAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGT--ACATCTTTACCGT 111097
||| |||| ||||| | ||||||||| |||| | | | | ||||| | ||
Sbjct 918615 AAGAACTTGTTCGACATGTAGTTGTATGTCTCGACAAC--ACGCTCCACATCATCGCCCC 918672
Query 111098 GAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAA 111157
||||||| ||| || ||||| | ||| | || ||| |||| | ||| ||||| |
Sbjct 918673 AGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTACCATCGA 918732
Query 111158 CACGCT---GAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201
||| | ||||| | ||| |||||||||| |||||||||
Sbjct 918733 ---GCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTAT 918776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975683425400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |