Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq41 264 1e-65 >seq41 Length=3900177 Score = 264 bits (292), Expect = 1e-65 Identities = 1113/1727 (64%), Gaps = 53/1727 (3%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| |||||| ||||| ||||| || |||||| || || ||||| | | || Sbjct 917078 GTTCAGCGACTGCGACTGGTCGATAAAGGCACCACGGTCCGCAGCCATCTGCACAATCGT 917137 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 | || || ||||| || |||||||||| | |||||| || | || |||| Sbjct 917138 CCGCTGAGAGATCTCCCACACCGTCTTGTACAGAGCCTTGATGTCTGCCGGGATGTTGGG 917197 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCA 109676 ||||| || || || ||| || | |||| | | |||||| | | |||||| Sbjct 917198 AATGTTCTGGATCGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGTTGTCCGACCA 917254 Query 109677 GAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGC 109736 ||||| | | || || | | || | ||||||||| || ||||| || Sbjct 917255 CAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCACCGGC 917314 Query 109737 AAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAG 109796 || || || ||| ||||| | ||||| || ||||| ||||| |||||||| || Sbjct 917315 CAGCACACGCCGCGAGTAAATGTTGGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAG 917374 Query 109797 GATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTT 109856 || |||| || || || || ||||| || |||| || |||||||| || | ||| | Sbjct 917375 AATCTGTGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTG 917434 Query 109857 CGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACC 109916 | ||| | | | |||| | ||||||||| | | | | | | | | || Sbjct 917435 CTCCTTGATCTTCAGCCGCAGCGAGTCCCAATCCCACAGGTC-CGA----TGGCGTGAC- 917488 Query 109917 ATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTA 109976 ||||||||| || || || || | ||||| | ||||||| |||| | ||| ||| Sbjct 917489 ATCCCACATGTCGGGCTGCAGAATACCCTGCGACACAGGAGACCCCTCATATGTCTGGTA 917548 Query 109977 CGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036 | ||||||| || ||||| |||| | || || || ||||| || || || ||||| Sbjct 917549 GGTGCCCTCAATCTTGGCCAGCTCGCACGACTCCGTCAGCGCCGCGTGGTAGATGGTCTC 917608 Query 110037 AAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA-A 110095 ||| | || |||| ||||| | ||| | | || ||||| | | || | | Sbjct 917609 AAAGACCTGCTTGTTCAGCAGGCGTGCCTCGGGAGACTCAAAGGGCATGCG-CAGCGCCA 917667 Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155 || | ||||| |||||||| ||||| ||||||||||| || || ||||||| | Sbjct 917668 GGAAGGCGTCCGCCAGACCCTGCACACCCAGACCAATGGGACGGTGGCGCATGTTACTGT 917727 Query 110156 GTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCG 110212 || || |||| || ||||| ||||| || |||| || || || || | Sbjct 917728 TCCGTGC---TTCTGGCACAGGGTAGTAGTTGACATCAATGATGCGGTTCAGGTTGCG-G 917783 Query 110213 TCA--CAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATT 110270 || ||| || ||||| || || ||| | | | | || ||| | | | | | Sbjct 917784 ACAACCAG-CTGCGTGACATCGTGCAGTCTCTGGAAGTCATACGACTCGTTGTTATAGTC 917842 Query 110271 GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGT 110330 ||| | || ||||| | ||| || | |||||||||| |||||| | | Sbjct 917843 GACGAAAGACGGAAGAGCCAAAGAGGCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGA 917902 Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 ||| || | ||| ||||| |||||||| || || ||| ||||| ||||||||| || Sbjct 917903 GTACTCGACAATCTCCGTGCACAAGTTCGAGCTGCGGATGGTACCCAGGTTCTTCTGGTT 917962 Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450 ||| |||||| ||||| ||||||||| | ||| | || || |||||||| | Sbjct 917963 GCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGC 918022 Query 110451 CTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG-TTGCGTTAGCGAGACCTTCC 110508 || |||||||| | ||| | | || | | | | | ||||| | || |||| || Sbjct 918023 CTCCAGAATGGCATACCACAGCTTCTGGGCCTTGATCTTCTTGCG--ACCGCGACCCTCG 918080 Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTC 110568 |||||| || ||||| ||||||| |||| ||||| ||||| || || | Sbjct 918081 CGCTCGTATTTCTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCGG-C 918139 Query 110569 GCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAG 110627 || || || ||| || | || | ||| | || || ||| || | |||||||||||| Sbjct 918140 GCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAG 918199 Query 110628 GTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTT 110687 ||| || ||||| | || |||||| |||||| ||| |||| || | |||||||| Sbjct 918200 GTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTT 918259 Query 110688 GAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA--CAGCG 110745 || || || | || || | || ||| | ||||| || || | |||| ||| Sbjct 918260 CTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATGCAG-A 918318 Query 110746 ATGGATC---CCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACC 110802 ||| | | || | | || |||| | || ||||| || ||| |||||||| Sbjct 918319 ATGCACCGGGCCGCTTGTTG-CCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACA 918377 Query 110803 CTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTG 110862 | ||||| || || || || | |||| || || || || ||| || | Sbjct 918378 CGAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTA 918437 Query 110863 GCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC 110922 ||||||||| |||| || || ||| || ||||| ||| ||| || |||||| Sbjct 918438 GCACGAATGCGATGGACATTCAGACCGATGCCACCAGCCGTCTTGGAGATCATGGCACAC 918497 Query 110923 -TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCA 110981 ||| |||| || | || || || ||||| ||| |||| || | | || ||||| Sbjct 918498 GTCT-TGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGCA 918556 Query 110982 AGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 || |||| ||||| | ||||| || || ||||| || || || | ||||| | | Sbjct 918557 GGAGGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATG--CGTA 918614 Query 111042 CAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGT--ACATCTTTACCGT 111097 ||| |||| ||||| | ||||||||| |||| | | | | ||||| | || Sbjct 918615 AAGAACTTGTTCGACATGTAGTTGTATGTCTCGACAAC--ACGCTCCACATCATCGCCCC 918672 Query 111098 GAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAA 111157 ||||||| ||| || ||||| | ||| | || ||| |||| | ||| ||||| | Sbjct 918673 AGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTACCATCGA 918732 Query 111158 CACGCT---GAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201 ||| | ||||| | ||| |||||||||| ||||||||| Sbjct 918733 ---GCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTAT 918776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975683425400