Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq41 170 2e-37 >seq41 Length=3900177 Score = 170 bits (188), Expect = 2e-37 Identities = 610/934 (65%), Gaps = 25/934 (3%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 ||||| || | || ||||| ||||| |||||| ||| ||| | | | |||||| | | Sbjct 917853 GGAAGAGCCAAAGAGGCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGAGTACTCGACA 917912 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||||||| || || || || |||| ||||| ||||| ||||| | Sbjct 917913 ATCTCCGTGCACAAGTTCGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGG 917972 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| ||||||||||||||| |||| | |||||||||||||| | || ||||| Sbjct 917973 TTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATG 918032 Query 106637 GCCTTCCACA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACT 106694 || | ||||| | || | | | || | | ||| | || ||||| |||||| | Sbjct 918033 GCATACCACAGCTTCTGGGCCTTGATCTTCTTGCG--ACCGCGACCCTCGCGCTCGTATT 918090 Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCT 106753 | ||| || || ||||||||||| || || | || || || || || || Sbjct 918091 TCTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCC-GGCGCATTCGTTG 918149 Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 || || | || | ||| | || || ||| || ||||||||||| ||||| || ||| Sbjct 918150 GGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATC 918209 Query 106814 CACA--GGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870 || | | || |||| ||||| | ||| || |||| || | |||||||| || Sbjct 918210 CAGAGTGCGAGGAAA--AGATCACGGGCACGGA-CCTCCTCCTTGCCTTGGTTCTTCCGC 918266 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC-GATAGATC- 106928 | || |||||||| | || ||| || ||||| ||||| | |||| ||| || | | Sbjct 918267 AGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGA-TGCAGAATGCACC 918325 Query 106929 ---CCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 || | | | ||| | |||| || ||||| || ||| ||| || || ||||||| Sbjct 918326 GGGCCGCTTGTTG-CCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCA 918384 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 107045 | || || || || | ||| || || || || ||| ||| | || | | Sbjct 918385 TGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAGCACGAA 918444 Query 107046 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 107105 ||||| | || || || || |||||| ||| ||||| |||||| | | | Sbjct 918445 TGCGATGGACATTCAGACCGATGCCACCAGCCGTCTTGGAGATCATGGCACACGTCTTGA 918504 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 | || | ||||| || | || || ||||| || | | |||||||| ||||| Sbjct 918505 GCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGCAGGAGGACA 918564 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT- 107224 ||| | || || || || ||||| || || || | || || | || | || | Sbjct 918565 GCTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAGA-ACTTG 918623 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 | ||||| | || ||||||||| | ||| || | || || || ||| || | | Sbjct 918624 TTCGACATGTAGTTGTATGTCTCGACAACACGCTCCACATCATCGCCCCAGATACCAACG 918683 Query 107285 GCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA--A 107342 ||||| ||||||| ||||| || || || | || | ||||||||| |||| | Sbjct 918684 GCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTACCATCGAGC--TTGAGGA 918741 Query 107343 GATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 | ||| | ||| ||||| |||| |||||||| Sbjct 918742 GGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTA 918775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980482885320