Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq41 170 2e-37
>seq41
Length=3900177
Score = 170 bits (188), Expect = 2e-37
Identities = 610/934 (65%), Gaps = 25/934 (3%)
Strand=Plus/Plus
Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516
||||| || | || ||||| ||||| |||||| ||| ||| | | | |||||| | |
Sbjct 917853 GGAAGAGCCAAAGAGGCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGAGTACTCGACA 917912
Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576
|| || || |||||||| || || || || |||| ||||| ||||| ||||| |
Sbjct 917913 ATCTCCGTGCACAAGTTCGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGG 917972
Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636
||||| ||||||||||||||| |||| | |||||||||||||| | || |||||
Sbjct 917973 TTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATG 918032
Query 106637 GCCTTCCACA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACT 106694
|| | ||||| | || | | | || | | ||| | || ||||| |||||| |
Sbjct 918033 GCATACCACAGCTTCTGGGCCTTGATCTTCTTGCG--ACCGCGACCCTCGCGCTCGTATT 918090
Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCT 106753
| ||| || || ||||||||||| || || | || || || || || ||
Sbjct 918091 TCTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCC-GGCGCATTCGTTG 918149
Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813
|| || | || | ||| | || || ||| || ||||||||||| ||||| || |||
Sbjct 918150 GGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATC 918209
Query 106814 CACA--GGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870
|| | | || |||| ||||| | ||| || |||| || | |||||||| ||
Sbjct 918210 CAGAGTGCGAGGAAA--AGATCACGGGCACGGA-CCTCCTCCTTGCCTTGGTTCTTCCGC 918266
Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC-GATAGATC- 106928
| || |||||||| | || ||| || ||||| ||||| | |||| ||| || | |
Sbjct 918267 AGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGA-TGCAGAATGCACC 918325
Query 106929 ---CCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985
|| | | | ||| | |||| || ||||| || ||| ||| || || |||||||
Sbjct 918326 GGGCCGCTTGTTG-CCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCA 918384
Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 107045
| || || || || | ||| || || || || ||| ||| | || | |
Sbjct 918385 TGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAGCACGAA 918444
Query 107046 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 107105
||||| | || || || || |||||| ||| ||||| |||||| | | |
Sbjct 918445 TGCGATGGACATTCAGACCGATGCCACCAGCCGTCTTGGAGATCATGGCACACGTCTTGA 918504
Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165
| || | ||||| || | || || ||||| || | | |||||||| |||||
Sbjct 918505 GCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGCAGGAGGACA 918564
Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT- 107224
||| | || || || || ||||| || || || | || || | || | || |
Sbjct 918565 GCTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAGA-ACTTG 918623
Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284
| ||||| | || ||||||||| | ||| || | || || || ||| || | |
Sbjct 918624 TTCGACATGTAGTTGTATGTCTCGACAACACGCTCCACATCATCGCCCCAGATACCAACG 918683
Query 107285 GCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA--A 107342
||||| ||||||| ||||| || || || | || | ||||||||| |||| |
Sbjct 918684 GCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTACCATCGAGC--TTGAGGA 918741
Query 107343 GATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376
| ||| | ||| ||||| |||| ||||||||
Sbjct 918742 GGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTA 918775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980482885320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |