Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq22 113 3e-20
seq11 91.5 1e-13
>seq22
Length=1908885
Score = 113 bits (124), Expect = 3e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| |||||| | || |||| || ||||| || || |||||
Sbjct 662923 TCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 662982
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||||||| |||| | ||||||||||| |||||| |||||
Sbjct 662983 ATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTG 663042
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || | ||| || |||| || ||||| || || ||||| ||||| |||
Sbjct 663043 TCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTGACA 663102
Query 34971 AAGATCTGCATA 34982
||||| ||||||
Sbjct 663103 AAGATTTGCATA 663114
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || |||
Sbjct 663133 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCC 663192
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| || || ||||| || || || ||||||||| |||| | ||||||||||| |
Sbjct 663193 AACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGA 663252
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | || | ||| || || | ||| ||||| ||
Sbjct 663253 ATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGTGATGGTCTTG 663312
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||| ||||| || |||||||||||
Sbjct 663313 CCGGTGAGCGTCTTGACGAAGATCTGCAT 663341
Score = 98.7 bits (108), Expect = 6e-16
Identities = 151/213 (71%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||||| || ||||| ||||| ||||| || ||| | || |||| |||
Sbjct 1644165 ACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTCC 1644106
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || || || ||||||||| | || | |||||||||||
Sbjct 1644105 AGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 1644046
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| || | ||| || || | ||| || ||
Sbjct 1644045 ATCTTGCTCTTGAC--AT--TGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGT 1643990
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||| || ||||| || |||||||||||
Sbjct 1643989 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1643957
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/196 (71%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| |||||||| || | || |||| |||| ||| || || || ||
Sbjct 662467 TCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCATCTTCCAACTGCTTGCCCGCGAAA 662526
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| |||| | ||||||||||| ||||||| |||||
Sbjct 662527 ATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGAC---- 662582
Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| | ||||| | ||| | || || || | || || || || ||||| || |||||
Sbjct 662583 GTTGTCGATTGTGTCCGAAGATTCCACTTCCAGCGTAATCGTCTTACCCGTCAGGGTCTT 662642
Query 34967 CACAAAGATCTGCATA 34982
|| || |||||||||
Sbjct 662643 GACGAAAATCTGCATA 662658
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || ||||| ||||| ||||| || || | || | || |||
Sbjct 662677 ACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGACAGTGTCCGGCCGTCCTCC 662736
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || || || |||||||| | || | |||||||||||
Sbjct 662737 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCTTGG 662796
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|||||| || ||| | || | ||| | |||||| || | || || || ||
Sbjct 662797 ATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAACTTCCAACGTAATCGTCTTG 662856
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| ||||| ||||| |||||||| ||||||
Sbjct 662857 CCGGTGAGTGTCTTGACAAAGATTTGCATA 662886
>seq11
Length=5116797
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 8/204 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || || | || |||| ||
Sbjct 2814764 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTCG 2814823
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| || || || |||||||| |||| | |||||||||||
Sbjct 2814824 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 2814883
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| || || ||| || |||| ||| |||||
Sbjct 2814884 ATCTTGCTCTTGAC--AT--TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGT 2814939
Query 34949 TTTTCCCGTGAGAGTCTTCACAAA 34972
|| |||||||| |||||||| ||
Sbjct 2814940 CTTGCCCGTGAGGGTCTTCACGAA 2814963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633429871704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |