Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq22 104 2e-17
>seq22
Length=1908885
Score = 104 bits (114), Expect = 2e-17
Identities = 140/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338
|| || || || ||||| |||| | || | | |||| |||| ||||| ||||| ||
Sbjct 1644147 TCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAAG 1644088
Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398
|||| ||||| || || || |||||||| || || || || || || || ||| |
Sbjct 1644087 ATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTG 1644028
Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458
|| | |||||| |||| ||||| ||||| |||| || ||||| || | || || ||
Sbjct 1644027 TCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACG 1643968
Query 101459 AATATCTGCATGGTT 101473
|| ||||||||||||
Sbjct 1643967 AAGATCTGCATGGTT 1643953
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || || || || || ||||| || | | || | | |||| ||||| |||
Sbjct 662455 TGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCATCTTCCAACTGC 662514
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || |||| ||||| || || ||||||||||| || || || ||||| ||
Sbjct 662515 TTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGAATCTTC 662574
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | ||||| || | ||||||||| || || | ||| || || ||
Sbjct 662575 GACTTGACGTTGTCGATTGTGTCCGAAGATTCCACTTCCAGCGTAATCGTCTTACCCGTC 662634
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 662635 AGGGTCTTGACGAAAATCTGCAT 662657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396278192325351
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |