Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq22 122 7e-23
>seq22
Length=1908885
Score = 122 bits (134), Expect = 7e-23
Identities = 166/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | ||||||| ||||| || ||||||||||| || || || ||||| || |
Sbjct 1644185 CGCCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGG 1644126
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| || | || | || |||| |||||| || || || ||||| ||||| || || | ||
Sbjct 1644125 ACAGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGG 1644066
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| |||||||||||| ||||| || ||| | | || || |||| |||||
Sbjct 1644065 GAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGACTCCA 1644006
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769
|||| | || || || || ||||||| || || || || |||||||| ||
Sbjct 1644005 CCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGT 1643954
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
|||||| | || |||| ||||| || ||||| ||| || ||||| ||||| || ||
Sbjct 662430 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGA 662489
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | || | || ||||||||||| || || || ||||| ||||| || || | ||
Sbjct 662490 CAGCGTCCGGCCATCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGG 662549
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
|| |||||||||||| |||||| || || | | | || || | |||||
Sbjct 662550 AATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATTGTGTCCGAAGATTCCAC 662609
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||||||| || ||||||| || || || |||||||||||
Sbjct 662610 TTCCAGCGTAATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| |||||| || ||||| ||| || || || ||||| ||||| || | ||
Sbjct 662668 AGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGACAGTGTCCGG 662727
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| |||||| || || || ||||| ||||| || || | || | ||||||
Sbjct 662728 CCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCC 662787
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||||| | | | || |||| ||| || |||| ||||
Sbjct 662788 TTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAACTTCCAACGTA 662847
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || || | || || ||||| || |||||
Sbjct 662848 ATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| || || ||| ||| || || || ||||| || || || | |||
Sbjct 663124 AGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGA 663183
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| ||||||||||| || ||||| ||||| ||||| || || | || | |||||||
Sbjct 663184 CCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 663243
Query 48669 TTGTCGCTAATCTT 48682
||||| ||||||
Sbjct 663244 TTGTCCTGAATCTT 663257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380937400364889
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |