Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq41 307 2e-78
seq42 158 2e-33
>seq41
Length=3900177
Score = 307 bits (340), Expect = 2e-78
Identities = 919/1414 (65%), Gaps = 48/1414 (3%)
Strand=Plus/Plus
Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124
||| | ||||| ||| |||||| | || |||| |||||| || | ||| |||||
Sbjct 917240 CATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCAC 917299
Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184
||||| || || | ||||| | || | ||| | ||| || ||| |||| |||| ||
Sbjct 917300 CTGGAACTCACCGGCCAGCACACGCCGCGAGTAAATGTTGGATGTGTACGGCTCGAAGCA 917359
Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244
||||||||||||||| ||||| | ||| || || ||||| || ||||||||||||||
Sbjct 917360 CTCGTTGTTGCCCAGAATCTGTGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACT 917419
Query 221245 GTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACAGTGTCCTCC 221304
|||||||| ||| ||||| | | ||||| || ||| || ||
Sbjct 917420 GTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAATCCCA--------- 917470
Query 221305 CAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACACCGGACT 221364
|||||| | ||||| |||
Sbjct 917471 CAGGTCCGATGGCGTGACATCCCACATGTCGGGCTGCAGAATACCCTGCGACACAGGAGA 917530
Query 221365 CCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGC 221424
||| || || | || ||||| || | | | |||| | |||| |||| |||||| ||
Sbjct 917531 CCCCTCATATGTCTGGTAGGTGCCCTCAATCTTGGCCAGCTCGCACGACTCCGTCAGCGC 917590
Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484
|||||||||||||||||||||| | |||||| || ||||||||||| ||
Sbjct 917591 CGCGTGGTAGATGGTCTCAAAGACCTGCTTGTTCAGCAGGCGTGCCTCGGGAGACTCAAA 917650
Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544
|||||| |||||| | | ||| |||| ||||| ||||| || || | ||| ||||| |
Sbjct 917651 GGGCATGCGCAGCGCCAGGAAGGCGTCCGCCAGACCCTGCACACCCAGACCAATGGGACG 917710
Query 221545 GTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGA 221602
||| | | |||| | || ||||||||||| || || ||||||| || || |
Sbjct 917711 GTGGCGCATGTTACTGTTCCGT--GCTTCTGGCACAGGGTAGTAGTTGACATCAATGA-- 917766
Query 221603 TTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACC 221662
|| ||||||| || ||| ||||| || || | | || | | |
Sbjct 917767 ----TGCGGTTCAGGTTGCGGAC---AACCAGCTGCGTGACATCGTGCAGTCT---CTGG 917816
Query 221663 AACTCGC-CGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721
|| || || | |||| | || || |||| || || | ||||| |||
Sbjct 917817 AAGTCATACGAC-TCGTTGTTATAGTCGACGAAAGACGGAAGAGCCAAAGAGGCCAAGTT 917875
Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT---GCT 221778
||||| |||||||||||| | |||| | ||||| || || | ||| |||
Sbjct 917876 GCACACAGCCACCTCGTCCGGAGCCGAGTACTCGACAATCTCCGTGCACAAGTTCGAGCT 917935
Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTTGTAGA 221837
|| |||||| ||||||| || || || |||||| ||| ||| | ||||||||||
Sbjct 917936 GCG---GATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCCTTGTAGA 917991
Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897
|||| ||||| ||| |||||| ||| ||| ||||||| | ||| || | |||||
Sbjct 917992 GCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCATACCACAGCT-TCTGG 918050
Query 221898 CGCTCACCGTCCTCTTG--ACTGC-ACCCTCGGTCTTTTCATACCCGGTATAGAGCATGT 221954
|| || ||||| || || ||||||| || | | | || || ||||| |
Sbjct 918051 GCCTTGA--TCTTCTTGCGACCGCGACCCTCGCGCTCGTATTTCTCG-TACAGAGCCT-- 918105
Query 221955 CAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCC 222014
|||||| || ||||| || ||||||| | || | ||| |||||||| |||
Sbjct 918106 CAAACTCCTCGCCGTAGCAATCAGCCAGGCCGGCGCATTCGTTGGGGCACATCAGCGTCC 918165
Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074
| | ||| | | || | || |||||| ||||| |||||||| || || | || |
Sbjct 918166 ACTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAA 918225
Query 222075 GATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAA 222134
|||| | || || ||||||| ||| | ||| |||| ||| || | |||||||| |
Sbjct 918226 GATCACGGGCACGGACCTCCTCCTTGCCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAGA 918285
Query 222135 TGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGA--GCGCCGGGTCGCTTGTTGCCACC 222192
|| || ||||||||||||| |||| | |||| || ||||| ||||||||||||||
Sbjct 918286 CATCGGCATGCCACGGCTCCAAGTAGATG--CAGAATGCACCGGGCCGCTTGTTGCCACC 918343
Query 222193 CTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252
||||||||| | || |||||||| ||||| | || | | ||||||||
Sbjct 918344 CTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCATGGGGATGATGCCGTTGGA 918403
Query 222253 TCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCC 222312
| ||||| ||||| |||||| | ||| || | | | | | || || ||
Sbjct 918404 TGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAGCACGAATGCGATGGACATTCAGACC 918463
Query 222313 GATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTC 222372
||| ||||| || || ||||||||||| || ||||||| ||||| |||||||||
Sbjct 918464 GATGCCACCAGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTC 918523
Query 222373 CATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACA 222432
|| || ||||| | || | || || || || |||| ||||| | || | |
Sbjct 918524 AATGCTATCATCCTTCATGTCTACGAGGAAGCAGGAGGACAGCTGAGCCTGGGGCGTGCC 918583
Query 222433 GGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAG 222466
|||||| || ||||| || ||| || ||||||
Sbjct 918584 GGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAG 918617
>seq42
Length=705881
Score = 158 bits (174), Expect = 2e-33
Identities = 304/450 (68%), Gaps = 13/450 (3%)
Strand=Plus/Minus
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| || || || || ||||| || |||||||| || |||||||| | || | |||
Sbjct 321802 AGCGCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGGCGCCTTCTCTTCCA 321743
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATC 25995
|||||||||||||| || || ||||| || ||| ||||| ||||| ||||| ||
Sbjct 321742 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTG-ACTTTCTCCAATGAGCTGATT 321684
Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055
| | |||||||| || |||| || |||||||||||||| | | | |||| || |
Sbjct 321683 TCCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCTGCTGTTCTC---CCACCTGAAC 321627
Query 26056 CACAAACCTTCTCAAG-AGACCGTCTA---CAGTATCATCAAAGAGGCTGTGGAGATCGA 26111
|| || |||| ||| || | || ||| || || ||||| |||| ||
Sbjct 321626 AACCGCCCGAG-CAAGCAGATGATCCAGGACATTATTGTC---GATGCTGTCAAGATTGA 321571
Query 26112 GAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCAT 26171
| ||||||| | ||||||||||| || |||||
Sbjct 321570 GCAGGAGTTCCTGACGGAGGCTCTGCCGTGTGCTCTGCTGGGCATGAACTCCACCCTCAT 321511
Query 26172 GAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACT 26231
|| || |||||||||| ||| ||||||| ||||||| | || || || || |
Sbjct 321510 GAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCGCCCTCGGCAACGACAAGGT 321451
Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291
||| || | | ||||| |||||||||||||| ||||| || ||| || ||||||||
Sbjct 321450 GTACCGTTCCACCAACCCCTTCGACTTTATGGAGAACATCTCCCTGGGTGGCAAGACCAA 321391
Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
||||||||| ||| | ||||| ||||| ||
Sbjct 321390 CTTCTTTGAGAAGCGCGTCGGTGACTACCA 321361
Score = 93.3 bits (102), Expect = 8e-14
Identities = 165/235 (70%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACT-CAAACTGGACCGCCGAAGAGATTGATCT 25535
|| ||| |||||||||||||| | | | || | |||||| ||||| |||||||||||
Sbjct 322262 ATCTGGCAGATGTACAAGAAG-CACGAGGCTTCCTTCTGGACGGCCGAGGAGATTGATCT 322204
Query 25536 GGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT- 25594
| |||||||| || ||| |||| || | || ||||| ||| ||| ||| |
Sbjct 322203 GTCCAAGGACCTGCACGACTGGCACAACCGCCTGAACGACGACGAGCGTTTCTTCATCTC 322144
Query 25595 --ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|| | | || ||||| || ||||||||||| || || |||||||| || |||| |
Sbjct 322143 CCACATTCTCGCCTTCTTCGCTGCCTCTGATGGCATCGTCAACGAGAACCTCGTCGAGCG 322084
Query 25653 ATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||| | || || || || | | ||||| || ||||| || ||||||||
Sbjct 322083 CTTCAGCGCTGAGGTCCAGGTGCCT-GAGGCTCGCTGCTTCTATGGCTTCCAGAT 322030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844300745920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |