Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq41 307 2e-78 seq42 158 2e-33 >seq41 Length=3900177 Score = 307 bits (340), Expect = 2e-78 Identities = 919/1414 (65%), Gaps = 48/1414 (3%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 ||| | ||||| ||| |||||| | || |||| |||||| || | ||| ||||| Sbjct 917240 CATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCAC 917299 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| || || | ||||| | || | ||| | ||| || ||| |||| |||| || Sbjct 917300 CTGGAACTCACCGGCCAGCACACGCCGCGAGTAAATGTTGGATGTGTACGGCTCGAAGCA 917359 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||| ||||| | ||| || || ||||| || |||||||||||||| Sbjct 917360 CTCGTTGTTGCCCAGAATCTGTGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACT 917419 Query 221245 GTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACAGTGTCCTCC 221304 |||||||| ||| ||||| | | ||||| || ||| || || Sbjct 917420 GTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAATCCCA--------- 917470 Query 221305 CAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACACCGGACT 221364 |||||| | ||||| ||| Sbjct 917471 CAGGTCCGATGGCGTGACATCCCACATGTCGGGCTGCAGAATACCCTGCGACACAGGAGA 917530 Query 221365 CCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGC 221424 ||| || || | || ||||| || | | | |||| | |||| |||| |||||| || Sbjct 917531 CCCCTCATATGTCTGGTAGGTGCCCTCAATCTTGGCCAGCTCGCACGACTCCGTCAGCGC 917590 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 |||||||||||||||||||||| | |||||| || ||||||||||| || Sbjct 917591 CGCGTGGTAGATGGTCTCAAAGACCTGCTTGTTCAGCAGGCGTGCCTCGGGAGACTCAAA 917650 Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 |||||| |||||| | | ||| |||| ||||| ||||| || || | ||| ||||| | Sbjct 917651 GGGCATGCGCAGCGCCAGGAAGGCGTCCGCCAGACCCTGCACACCCAGACCAATGGGACG 917710 Query 221545 GTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGA 221602 ||| | | |||| | || ||||||||||| || || ||||||| || || | Sbjct 917711 GTGGCGCATGTTACTGTTCCGT--GCTTCTGGCACAGGGTAGTAGTTGACATCAATGA-- 917766 Query 221603 TTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACC 221662 || ||||||| || ||| ||||| || || | | || | | | Sbjct 917767 ----TGCGGTTCAGGTTGCGGAC---AACCAGCTGCGTGACATCGTGCAGTCT---CTGG 917816 Query 221663 AACTCGC-CGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721 || || || | |||| | || || |||| || || | ||||| ||| Sbjct 917817 AAGTCATACGAC-TCGTTGTTATAGTCGACGAAAGACGGAAGAGCCAAAGAGGCCAAGTT 917875 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT---GCT 221778 ||||| |||||||||||| | |||| | ||||| || || | ||| ||| Sbjct 917876 GCACACAGCCACCTCGTCCGGAGCCGAGTACTCGACAATCTCCGTGCACAAGTTCGAGCT 917935 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTTGTAGA 221837 || |||||| ||||||| || || || |||||| ||| ||| | |||||||||| Sbjct 917936 GCG---GATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCCTTGTAGA 917991 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 |||| ||||| ||| |||||| ||| ||| ||||||| | ||| || | ||||| Sbjct 917992 GCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCATACCACAGCT-TCTGG 918050 Query 221898 CGCTCACCGTCCTCTTG--ACTGC-ACCCTCGGTCTTTTCATACCCGGTATAGAGCATGT 221954 || || ||||| || || ||||||| || | | | || || ||||| | Sbjct 918051 GCCTTGA--TCTTCTTGCGACCGCGACCCTCGCGCTCGTATTTCTCG-TACAGAGCCT-- 918105 Query 221955 CAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCC 222014 |||||| || ||||| || ||||||| | || | ||| |||||||| ||| Sbjct 918106 CAAACTCCTCGCCGTAGCAATCAGCCAGGCCGGCGCATTCGTTGGGGCACATCAGCGTCC 918165 Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074 | | ||| | | || | || |||||| ||||| |||||||| || || | || | Sbjct 918166 ACTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAA 918225 Query 222075 GATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAA 222134 |||| | || || ||||||| ||| | ||| |||| ||| || | |||||||| | Sbjct 918226 GATCACGGGCACGGACCTCCTCCTTGCCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAGA 918285 Query 222135 TGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGA--GCGCCGGGTCGCTTGTTGCCACC 222192 || || ||||||||||||| |||| | |||| || ||||| |||||||||||||| Sbjct 918286 CATCGGCATGCCACGGCTCCAAGTAGATG--CAGAATGCACCGGGCCGCTTGTTGCCACC 918343 Query 222193 CTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252 ||||||||| | || |||||||| ||||| | || | | |||||||| Sbjct 918344 CTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCATGGGGATGATGCCGTTGGA 918403 Query 222253 TCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCC 222312 | ||||| ||||| |||||| | ||| || | | | | | || || || Sbjct 918404 TGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAGCACGAATGCGATGGACATTCAGACC 918463 Query 222313 GATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTC 222372 ||| ||||| || || ||||||||||| || ||||||| ||||| ||||||||| Sbjct 918464 GATGCCACCAGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTC 918523 Query 222373 CATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACA 222432 || || ||||| | || | || || || || |||| ||||| | || | | Sbjct 918524 AATGCTATCATCCTTCATGTCTACGAGGAAGCAGGAGGACAGCTGAGCCTGGGGCGTGCC 918583 Query 222433 GGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAG 222466 |||||| || ||||| || ||| || |||||| Sbjct 918584 GGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAG 918617 >seq42 Length=705881 Score = 158 bits (174), Expect = 2e-33 Identities = 304/450 (68%), Gaps = 13/450 (3%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| || || || || ||||| || |||||||| || |||||||| | || | ||| Sbjct 321802 AGCGCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGGCGCCTTCTCTTCCA 321743 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATC 25995 |||||||||||||| || || ||||| || ||| ||||| ||||| ||||| || Sbjct 321742 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTG-ACTTTCTCCAATGAGCTGATT 321684 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055 | | |||||||| || |||| || |||||||||||||| | | | |||| || | Sbjct 321683 TCCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCTGCTGTTCTC---CCACCTGAAC 321627 Query 26056 CACAAACCTTCTCAAG-AGACCGTCTA---CAGTATCATCAAAGAGGCTGTGGAGATCGA 26111 || || |||| ||| || | || ||| || || ||||| |||| || Sbjct 321626 AACCGCCCGAG-CAAGCAGATGATCCAGGACATTATTGTC---GATGCTGTCAAGATTGA 321571 Query 26112 GAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCAT 26171 | ||||||| | ||||||||||| || ||||| Sbjct 321570 GCAGGAGTTCCTGACGGAGGCTCTGCCGTGTGCTCTGCTGGGCATGAACTCCACCCTCAT 321511 Query 26172 GAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACT 26231 || || |||||||||| ||| ||||||| ||||||| | || || || || | Sbjct 321510 GAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCGCCCTCGGCAACGACAAGGT 321451 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 ||| || | | ||||| |||||||||||||| ||||| || ||| || |||||||| Sbjct 321450 GTACCGTTCCACCAACCCCTTCGACTTTATGGAGAACATCTCCCTGGGTGGCAAGACCAA 321391 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||||| ||| | ||||| ||||| || Sbjct 321390 CTTCTTTGAGAAGCGCGTCGGTGACTACCA 321361 Score = 93.3 bits (102), Expect = 8e-14 Identities = 165/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACT-CAAACTGGACCGCCGAAGAGATTGATCT 25535 || ||| |||||||||||||| | | | || | |||||| ||||| ||||||||||| Sbjct 322262 ATCTGGCAGATGTACAAGAAG-CACGAGGCTTCCTTCTGGACGGCCGAGGAGATTGATCT 322204 Query 25536 GGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT- 25594 | |||||||| || ||| |||| || | || ||||| ||| ||| ||| | Sbjct 322203 GTCCAAGGACCTGCACGACTGGCACAACCGCCTGAACGACGACGAGCGTTTCTTCATCTC 322144 Query 25595 --ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || ||||| || ||||||||||| || || |||||||| || |||| | Sbjct 322143 CCACATTCTCGCCTTCTTCGCTGCCTCTGATGGCATCGTCAACGAGAACCTCGTCGAGCG 322084 Query 25653 ATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | || || || || | | ||||| || ||||| || |||||||| Sbjct 322083 CTTCAGCGCTGAGGTCCAGGTGCCT-GAGGCTCGCTGCTTCTATGGCTTCCAGAT 322030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844300745920