Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq41 163 3e-35 >seq41 Length=3900177 Score = 163 bits (180), Expect = 3e-35 Identities = 1044/1654 (63%), Gaps = 53/1654 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| | ||| || |||| ||||||||| | || Sbjct 918775 TACTTTGGCTTCAAGACCCTGGAGCGGTCCTACCTCCTCAA--GCTCGATGGTAAGATCG 918718 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| | ||||| || || | || ||| || || || | | Sbjct 918717 TCGAGCGGCCGCAGCACATGATTATGCGCGTGGCCGTTGGTATCTGGGGCGATGATGTGG 918658 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCA 75322 | ||| | ||||||||| || | ||||| | | || | || | || || | || Sbjct 918657 AGCGTGTTGTCGAGACATACAACTACATGTCGAACAAGT-TCTTTACGCATGCCTCGCCG 918599 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || || ||||| || || || || | ||| ||||| |||||||| | | || Sbjct 918598 ACGCTTTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCCTCCTGCTTCCTCGTAGACATG 918539 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||| || || | || ||||| | || || | | |||||| ||||| ||| Sbjct 918538 AAGGATGATAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAG 918479 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 |||||| || || || || | ||||| | | || | ||| ||| Sbjct 918478 ACGGCTGGTGGCATCGGTCTGAATGTCCATCGCATTCGTGCTACCGGCTCTTACATTGCC 918419 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || || || ||| | || || || || |||||||| || || ||| ||| || Sbjct 918418 GGCACTAACGGCACATCCAACGGCATCATCCCCATGCTTCGTGTCTTCAACAACACGGCC 918359 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGG---GGTCCATCGCGG-TCTACTTGGAACC 75618 ||||| || |||| | | ||| | || ||| ||| | |||||||||| || Sbjct 918358 CGCTACGTGGATCAGG-GTGGCAACAAGCGGCCCGGTGCATTCTGCATCTACTTGGAGCC 918300 Query 75619 ATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGC 75678 |||||||||||| || | |||||||| || | || |||||||| | || |||| Sbjct 918299 GTGGCATGCCGATGTCTTTGAGTTCCTCGACCTGCGGAAGAACCAAGGCAAGGAGGAGG- 918241 Query 75679 TCGGTGTA-GAGATCTCTTTTCATCCC--TGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 || ||| | ||||| |||| || | | ||||| || ||||| ||||||||||| || Sbjct 918240 TCCGTGCCCGTGATCT--TTTCCTCGCACTCTGGATCCCCGACCTGTTCATGAAGCGTGT 918183 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACG 75794 ||| || || | ||| | || | || || || || || || || || | || Sbjct 918182 GGAGAAGAACGGCGAGTGGACGCTGATGTGCCCCAACGAATGCGCC-GGCCTGGCTGATT 918124 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CA 75851 || ||||||||||| || || ||| || || || |||||| | | || Sbjct 918123 GCTACGGCGAGGAGTTTGAGGCTCTGTACGAGAAATACGAGCGCGAGGGTCGCGGTCGCA 918064 Query 75852 ATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910 | || | || | | || | | ||| | || ||||| | | ||||||||||| Sbjct 918063 AGAAGAT----CAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAGGCGCAGACGGAGACG 918008 Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970 || | || | ||||| |||||||| || ||| ||||| ||||| ||||| || Sbjct 918007 GGCAACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTG 917948 Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || ||| ||||| || | |||||||| ||| | |||||| | | | ||| ||| Sbjct 917947 GGTACCATCCGCAGCTCGAACTTGTGCACGGAGATTGTCGAGTACTCGGCTCCGGACGAG 917888 Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA----AGAGAC 76086 |||||| ||||| ||||| || | || ||||| | ||| | | | || Sbjct 917887 GTGGCTGTGTGCAACTTGGCCTCTTTGGCTCTTCCGTCTTTCGTCGACTATAACAACGAG 917828 Query 76087 TCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAA 76146 ||| | ||| | | | ||| || || |||| || | ||| | || || || Sbjct 917827 TCG----TATGACTTCCAGAGACTGCACGATGTCACGCAGCTGGTTGTCCGCAACCTGAA 917772 Query 76147 CCGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGAC 76205 ||| ||||||| || | || || || ||| || || || ||| ||||| | Sbjct 917771 CCGCATCATTGATGTCAACTACTACCCTGTGCCAGA-AGCACGGAACAGTAACATGCGCC 917713 Query 76206 ACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG 76265 || | || |||||| ||||||| || ||||| ||||| | || || |||| || Sbjct 917712 ACCGTCCCATTGGTCTGGGTGTGCAGGGTCTGGCGGACG-----CCTTCCTGGCGCTGCG 917658 Query 76266 CA-----TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTA 76320 || ||||| || || || | |||| | ||||||| ||||| || Sbjct 917657 CATGCCCTTTGAGTCTCCCGAGGCACGCCTGCTGAACAAGCAGGTCTTTGAGACCATCTA 917598 Query 76321 TCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATT 76380 ||||| | ||| || | || || |||| | | || |||| |||||| Sbjct 917597 CCACGCGGCGCTGACGGAGTCGTGCGAGCTGGCCAAGATTGAGGGCACCTACCAGACATA 917538 Query 76381 TGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA- 76439 |||||| ||||| | ||| || || | || ||| || ||||||| | || | ||| Sbjct 917537 TGAGGGGTCTCCTGTGTCGCAGGGTATTCTGCAGCCCGACATGTGGG-ATGTCACGCCAT 917479 Query 76440 AGCTCAACTACGACTGGGATGTTCTCAAG--GAACGCATCAAGGAGAAGGGTCTTCGTAA 76497 | | | || ||||| || | ||| ||||||||| | ||| | || || Sbjct 917478 CGGACCTGTGGGATTGGGACTCGCTGCGGCTGAA--GATCAAGGAGCACGGTGTGCGCAA 917421 Query 76498 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 76557 |||||| || |||| || ||||| || || || || |||| || |||| || || || Sbjct 917420 CAGTCTGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCACAGATTCTGGGCAACAACGA 917361 Query 76558 ATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGT 76617 ||||| || || |||||| | ||||| ||| | | | || || |||||||| Sbjct 917360 GTGCTTCGAGCCGTACACATCCAACATTTACTCGCGGCGTGTGCTGGCCGGTGAGTTCCA 917301 Query 76618 CATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATAT 76677 | |||||| | || |||| ||||| | || ||||| ||||| | | || Sbjct 917300 GGTGGTCAACCCGTGGCTGCTCAAGGACCTGGTCGACATGGGTCTGTGGTCGGACAACAT 917241 Query 76678 GAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGA 76737 |||| | | ||| | | | ||||| || || || || | | ||||| | || Sbjct 917240 GAAGAACCGCATCATTGCCGAGAACGGTTCGATCCAGAACATTCCCAACATCCCGGCAGA 917181 Query 76738 TATCAAGAATCTCTACCGCACAGTGTGGGAAATC 76771 |||||| ||| ||| || |||||||| ||| Sbjct 917180 CATCAAGGCTCTGTACAAGACGGTGTGGGAGATC 917147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569279343840