Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq41 253 3e-62
seq22 196 6e-45
seq11 156 6e-33
>seq41
Length=3900177
Score = 253 bits (280), Expect = 3e-62
Identities = 469/683 (69%), Gaps = 5/683 (1%)
Strand=Plus/Minus
Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422
|||| ||| | |||||||| || ||||| || || || || | ||| |||||||| || |
Sbjct 663442 AGATCATCGCCAATGACCAGGGTAACCGCACCACACCGTCCTTCGTGGCCTTTACGGACA 663383
Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482
|| || | |||| || ||||| || || ||| || |||||||| || || |
Sbjct 663382 CGGAGCGGTTGATTGGTGACGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCG 663323
Query 195483 TCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATA 195542
|||| ||||| ||||| || ||||| |||||||| | || | ||||| | ||||
Sbjct 663322 TCTTCGACGCCAAGCGGCTCATTGGCCGCAAGTTCGCCGACGCTGAGGTCCAGGCGGATA 663263
Query 195543 TAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602
| ||| ||| | | | ||| | | | ||||| ||||| || | | || |
Sbjct 663262 TGAAGCACTTCCCCT-TCAAGATCATT--GACAAGGCTGGCAAGCCCATTGTCGAGGTCG 663206
Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662
| || | || |||||||| || || | ||||| |||||||| || ||||| ||| |
Sbjct 663205 AGTTCAAGGGCGAGAAGAAGCAGTTCACCCCCGAGGAAATTTCCTCCATGGTCCTGACCA 663146
Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722
||||| ||||| || || || | | | ||| || || || | || || | || |
Sbjct 663145 AGATGCGCGAGACCGCTGAGTCCTACCTCGGTGGCACCGTCAACAACGCTGTCATCACCG 663086
Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782
| || || ||||||| || || || || ||||| || |||||||| | | ||||| |
Sbjct 663085 TTCCGGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCG 663026
Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842
|||| ||| || | || ||||| || || || || ||||| ||||| || ||||| |
Sbjct 663025 GTCTCAACGTCCTGCGTATCATCAACGAGCCCACGGCCGCTGCCATTGCCTACGGTCTCG 662966
Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902
||||||| || | || || || ||||||| || || ||||||||||| || |
Sbjct 662965 ACAAGAAGGTTGAGGGCGAGCGCAACGTCCTGATCTTCGACCTGGGTGGTGGTACTTTCG 662906
Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962
|||| || || || | ||||| | ||||| ||||| || ||| | ||||| ||||| |
Sbjct 662905 ATGTGTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACA 662846
Query 195963 CTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTC 196021
|||| || |||||||| || ||||| || || || || |||||| | ||||||
Sbjct 662845 CTCACCTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTTGTC-AACGAGTTC 662787
Query 196022 CGTCGAAAGAATAAGAAAGATAT 196044
|| ||||| ||||| | |||
Sbjct 662786 AAGCGCAAGAACAAGAAGGGTAT 662764
Score = 131 bits (144), Expect = 2e-25
Identities = 501/779 (64%), Gaps = 17/779 (2%)
Strand=Plus/Minus
Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722
|||||||||||| ||| ||| | || || || | || | | || || | || |
Sbjct 3424188 AGATGAAGGAGATTGCCGAAGCCAAGATCGGCAAGAAGGTTGAGAAGGCCGTCATCACGG 3424129
Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782
| || || ||||||| || || || ||| |||| |||||||| | ||| ||| | |
Sbjct 3424128 TCCCGGCCTACTTCAACGACAACCAGCGTCAGTCGACCAAGGACGCCGGTGCCATTTCTG 3424069
Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842
| || ||| ||| | || ||||| || || || || || || ||||| || |||||||
Sbjct 3424068 GCCTGAACGTTCTGCGTATCATCAACGAGCCGACGGCTGCCGCTATTGCCTACGGTCTGG 3424009
Query 195843 ACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGT 195899
| |||| | | | || || || |||||| ||||| ||||||||||| |
Sbjct 3424008 GCTCTGGCAAGTCTGCCAAGGAGCGCAACGTCCTGATCTACGATCTGGGTGGTGGTACTT 3423949
Query 195900 TTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTG 195959
| ||||| || || || || || | || ||| | ||| || ||||| ||||||||||
Sbjct 3423948 TCGATGTGTCTCTCCTGAACATCCAGGGCGGTGTCTTCACCGTCAAGGCCACTGCTGGTG 3423889
Query 195960 ATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAGT 196019
| || ||||| ||||| | || || || | || || || | | || |
Sbjct 3423888 ACACCCATCTGGGTGGCCAGGACTTTGACACCAACCTGCTGGACCACTGCAAGAAGGACT 3423829
Query 196020 TCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGA 196079
||| || |||| ||||| || | ||||| || | | || || ||||| || | |
Sbjct 3423828 TCCTCCGCAAGACCAAGAAGGACCTGTCTGGCGATGCGCGTGCCCTGCGTCGTCTGCGCA 3423769
Query 196080 CTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGG--CTCAAACAATGGTTGAGAT 196137
| || || || |||||||| || || || || | ||| | || | | | |||||
Sbjct 3423768 CGGCCTGCGAGCGTGCCAAGCGGACGCTGTC--CAGCGGCACCCAGGCCACCATCGAGAT 3423711
Query 196138 TGATTCGTTGTTTGACGGAATTGACTTC--TATACAACTATTACCCGTGCACGTTTTGAA 196195
|| ||| | |||||||| |||||| || || || |||||||| ||||| ||
Sbjct 3423710 CGACTCGCTTTTTGACGGCGAGGACTTCAGCATGCA--GATCACCCGTGCCCGTTTCGAG 3423653
Query 196196 GAGTTAAACTCTGATTTGTTTAGGAAGTGTA---TGGAACCTGTTGAACAAGTACTTCGT 196252
||| | || | | ||| | ||| | | | || || || | ||| || ||
Sbjct 3423652 GAGCTCAA--CGGCGTTGCCT-TCAAGGGCACGCTCGACCCCGTCGCACAGGTTCTCAAG 3423596
Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312
||| | |||| ||| || || || || ||||| || || || || ||||||
Sbjct 3423595 GACTCTGGTCTGGACAAGAGCGCCGTCGACGAGATCGTCCTGGTTGGCGGTTCCACCCGT 3423536
Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372
|| || || || || |||| ||||||||| || | | | || |
Sbjct 3423535 ATCCCCCGTATCCAGAAGCTGCTGAGCGACTTCTTCAACGGCAAGAAGCTCGAGAAGAGC 3423476
Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGG 196431
|||||||| ||||| || ||||| || ||||| ||||| ||||| | ||| || || ||
Sbjct 3423475 ATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCCGTCCAGGCCGGTATCCTGTCGGG 3423417
>seq22
Length=1908885
Score = 196 bits (216), Expect = 6e-45
Identities = 183/233 (79%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| |||||||||||||||| || || || || || || || ||||| |||||||| ||||
Sbjct 663118 GTGGTATGCAAATCTTTGTCAAGACACTCACCGGCAAGACCATCACTCTCGAGGTCGAGT 663059
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
|||| ||||| ||||| || |||| ||||||||| || ||||| ||||| || || |
Sbjct 663058 CGTCCGACACGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCGCCAG 662999
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| ||||| || || || |||||||| || ||||| || ||||| || ||||| | || |
Sbjct 662998 ACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACT 662939
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| | || |||||||||||||| ||||| ||||| | || || ||||||
Sbjct 662938 ACAACATCCAGAAGGAGTCTACTCTCCACCTGGTTCTCCGCCTGCGTGGTGGT 662886
Score = 163 bits (180), Expect = 4e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || ||||||||||| ||||| ||||||||
Sbjct 1643957 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 1644016
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| |||||| || || ||||| |||||||| || || |||
Sbjct 1644017 GACACTATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 1644076
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || || || || || ||||| || ||||| || ||||| | || ||||||
Sbjct 1644077 CAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGACTACAAC 1644136
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091
| || |||||| || || ||||| || || |||| || ||||| ||
Sbjct 1644137 ATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGGCTCCGTGGTGGCGC 1644186
Score = 159 bits (176), Expect = 5e-34
Identities = 175/233 (75%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| |||||||||||||||| || || || || || || || || || | || |||||||
Sbjct 662890 GTGGTATGCAAATCTTTGTCAAGACACTCACCGGCAAGACGATTACGTTGGAAGTTGAGT 662831
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
|||| ||||||||||| ||| | || | ||||| ||||| ||||| || || || ||||
Sbjct 662830 CGTCTGACACAATCGACAACGTAAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCG 662771
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| ||||| || || ||||| || || || ||||| || || || || || || |||| |
Sbjct 662770 ACCAGCAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGGACACTGTCTGACT 662711
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| | || |||||||| || || ||| | || || | || || ||||||
Sbjct 662710 ACAACATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGT 662658
Score = 152 bits (168), Expect = 7e-32
Identities = 164/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| || || || || ||||| || || || || || || || || || || |
Sbjct 662662 GTGGTATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACGCTGGAAGTGGAAT 662603
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| || ||||||||||| ||| |||| | |||||||| || ||||| |||||||| || |
Sbjct 662602 CTTCGGACACAATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCTG 662543
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| ||||| || || ||||| || || || ||| | |||||||| || || || | || |
Sbjct 662542 ACCAGCAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGGACGCTGTCGGACT 662483
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
||||| |||| |||||||| || || ||||| || ||
Sbjct 662482 ACAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 662446
>seq11
Length=5116797
Score = 156 bits (172), Expect = 6e-33
Identities = 166/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930
|| ||||| ||||| || || || || |||||||||||||| ||||| || ||||| |||
Sbjct 2814963 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 2814904
Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990
|| || |||| |||||| || || ||||| ||||| || || || ||||| || ||
Sbjct 2814903 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTG 2814844
Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAG 172050
|| |||||||| || ||||| || ||||| || || || | || |||||| | || |||
Sbjct 2814843 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAGAAG 2814784
Query 172051 GAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| || || ||||| || || | || || ||||||
Sbjct 2814783 GAGTCCACCCTCCACCTGGTGCTCCGCCTGCGTGGTGGT 2814745
Score = 109 bits (120), Expect = 7e-19
Identities = 216/314 (69%), Gaps = 12/314 (4%)
Strand=Plus/Plus
Query 198549 ATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGT 198608
|||||||| ||||| | ||| | || | || ||||| ||||| || | || ||
Sbjct 4553652 ATCCCACGCGGTGCCATCCTCTCGGGACCGCCTGGTACCGGTAAGACGTTGCTGGCCAAG 4553711
Query 198609 GCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG---CGAGTTTCATC 198665
|| | || || || ||| | || |||||| ||||| | || |||| |||||| | ||
Sbjct 4553712 GCGACGGCCGGCGAGTCGGGCGTGCCCTTT-TTCAGCG-TCAGCGGTTCCGAGTT-CGTC 4553768
Query 198666 GAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAA 198725
|||||||| || ||||| |||||| ||| ||||| || ||||||| || || |
Sbjct 4553769 GAGATGTTTGTCGGTGTCGGTGCTTCGCGTGTCCGCGACCTCTTTGCCACGGCCCGCAAG 4553828
Query 198726 AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGTAAGAAGCGTGGTGGA 198785
|| || || |||||||||||||| ||||| ||||| ||||| | |||||| | |
Sbjct 4553829 AACGCGCCCTGCATCATCTTCATTGACGAGATCGACGCCATTGGTCGGTCGCGTGGCGAA 4553888
Query 198786 -ACTACTACACCT-----GGTAATGATGAGCGTGAGCAGACGATTAACCAGCTTCTCACT 198839
| || || | || || || ||||| ||| || | |||||| | |||||
Sbjct 4553889 GGCCGCTTCAGTTCTGGCGGCAACGAAGAGCGCGAGGCTACCCTCAACCAGATCCTCACC 4553948
Query 198840 GAGATGGATGGTTT 198853
|||||||| || ||
Sbjct 4553949 GAGATGGACGGCTT 4553962
Score = 86.0 bits (94), Expect = 8e-12
Identities = 179/263 (68%), Gaps = 3/263 (1%)
Strand=Plus/Plus
Query 195725 CCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGT 195784
|| || ||||||| || || || ||||| || |||||||| | | || || ||
Sbjct 1200143 CCGGCCTACTTCAACGACAACCAGCGCCAGGCTACCAAGGACGCCGGTATCATCGCTGGC 1200202
Query 195785 CTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGAC 195844
|| ||| ||| | || |||| || || || ||||| || ||||| || |||||||||
Sbjct 1200203 CTGAACGTTCTGCGTATCGTCAACGAGCCCACCGCGGCCGCCATTGCCTACGGTCTGGAC 1200262
Query 195845 AAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGAT 195904
|||| | | | || || | || |||| | | || || ||||| ||||| || |||
Sbjct 1200263 AAGACCGACGGCG-AGCGCCAGAT-CATTG-TGTACGACCTTGGTGGCGGTACTTTCGAT 1200319
Query 195905 GTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACT 195964
|| || || || || || || | ||||| || || || |||||||| ||
Sbjct 1200320 GTGTCCCTGCTTTCCATCGACCAGGGCGTGTTCGAGGTTCTCGCGACGGCTGGTGACACC 1200379
Query 195965 CATCTAGGTGGTGAAGATTTCGA 195987
|| || |||||||| ||||||||
Sbjct 1200380 CACCTGGGTGGTGAGGATTTCGA 1200402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657862046398960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |