Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq41 253 3e-62 seq22 196 6e-45 seq11 156 6e-33 >seq41 Length=3900177 Score = 253 bits (280), Expect = 3e-62 Identities = 469/683 (69%), Gaps = 5/683 (1%) Strand=Plus/Minus Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422 |||| ||| | |||||||| || ||||| || || || || | ||| |||||||| || | Sbjct 663442 AGATCATCGCCAATGACCAGGGTAACCGCACCACACCGTCCTTCGTGGCCTTTACGGACA 663383 Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482 || || | |||| || ||||| || || ||| || |||||||| || || | Sbjct 663382 CGGAGCGGTTGATTGGTGACGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCG 663323 Query 195483 TCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATA 195542 |||| ||||| ||||| || ||||| |||||||| | || | ||||| | |||| Sbjct 663322 TCTTCGACGCCAAGCGGCTCATTGGCCGCAAGTTCGCCGACGCTGAGGTCCAGGCGGATA 663263 Query 195543 TAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602 | ||| ||| | | | ||| | | | ||||| ||||| || | | || | Sbjct 663262 TGAAGCACTTCCCCT-TCAAGATCATT--GACAAGGCTGGCAAGCCCATTGTCGAGGTCG 663206 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | || | || |||||||| || || | ||||| |||||||| || ||||| ||| | Sbjct 663205 AGTTCAAGGGCGAGAAGAAGCAGTTCACCCCCGAGGAAATTTCCTCCATGGTCCTGACCA 663146 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 ||||| ||||| || || || | | | ||| || || || | || || | || | Sbjct 663145 AGATGCGCGAGACCGCTGAGTCCTACCTCGGTGGCACCGTCAACAACGCTGTCATCACCG 663086 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || || ||||||| || || || || ||||| || |||||||| | | ||||| | Sbjct 663085 TTCCGGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCG 663026 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 |||| ||| || | || ||||| || || || || ||||| ||||| || ||||| | Sbjct 663025 GTCTCAACGTCCTGCGTATCATCAACGAGCCCACGGCCGCTGCCATTGCCTACGGTCTCG 662966 Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902 ||||||| || | || || || ||||||| || || ||||||||||| || | Sbjct 662965 ACAAGAAGGTTGAGGGCGAGCGCAACGTCCTGATCTTCGACCTGGGTGGTGGTACTTTCG 662906 Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962 |||| || || || | ||||| | ||||| ||||| || ||| | ||||| ||||| | Sbjct 662905 ATGTGTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACA 662846 Query 195963 CTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTC 196021 |||| || |||||||| || ||||| || || || || |||||| | |||||| Sbjct 662845 CTCACCTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTTGTC-AACGAGTTC 662787 Query 196022 CGTCGAAAGAATAAGAAAGATAT 196044 || ||||| ||||| | ||| Sbjct 662786 AAGCGCAAGAACAAGAAGGGTAT 662764 Score = 131 bits (144), Expect = 2e-25 Identities = 501/779 (64%), Gaps = 17/779 (2%) Strand=Plus/Minus Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||||| ||| ||| | || || || | || | | || || | || | Sbjct 3424188 AGATGAAGGAGATTGCCGAAGCCAAGATCGGCAAGAAGGTTGAGAAGGCCGTCATCACGG 3424129 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || || ||||||| || || || ||| |||| |||||||| | ||| ||| | | Sbjct 3424128 TCCCGGCCTACTTCAACGACAACCAGCGTCAGTCGACCAAGGACGCCGGTGCCATTTCTG 3424069 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 | || ||| ||| | || ||||| || || || || || || ||||| || ||||||| Sbjct 3424068 GCCTGAACGTTCTGCGTATCATCAACGAGCCGACGGCTGCCGCTATTGCCTACGGTCTGG 3424009 Query 195843 ACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGT 195899 | |||| | | | || || || |||||| ||||| ||||||||||| | Sbjct 3424008 GCTCTGGCAAGTCTGCCAAGGAGCGCAACGTCCTGATCTACGATCTGGGTGGTGGTACTT 3423949 Query 195900 TTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTG 195959 | ||||| || || || || || | || ||| | ||| || ||||| |||||||||| Sbjct 3423948 TCGATGTGTCTCTCCTGAACATCCAGGGCGGTGTCTTCACCGTCAAGGCCACTGCTGGTG 3423889 Query 195960 ATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAGT 196019 | || ||||| ||||| | || || || | || || || | | || | Sbjct 3423888 ACACCCATCTGGGTGGCCAGGACTTTGACACCAACCTGCTGGACCACTGCAAGAAGGACT 3423829 Query 196020 TCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGA 196079 ||| || |||| ||||| || | ||||| || | | || || ||||| || | | Sbjct 3423828 TCCTCCGCAAGACCAAGAAGGACCTGTCTGGCGATGCGCGTGCCCTGCGTCGTCTGCGCA 3423769 Query 196080 CTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGG--CTCAAACAATGGTTGAGAT 196137 | || || || |||||||| || || || || | ||| | || | | | ||||| Sbjct 3423768 CGGCCTGCGAGCGTGCCAAGCGGACGCTGTC--CAGCGGCACCCAGGCCACCATCGAGAT 3423711 Query 196138 TGATTCGTTGTTTGACGGAATTGACTTC--TATACAACTATTACCCGTGCACGTTTTGAA 196195 || ||| | |||||||| |||||| || || || |||||||| ||||| || Sbjct 3423710 CGACTCGCTTTTTGACGGCGAGGACTTCAGCATGCA--GATCACCCGTGCCCGTTTCGAG 3423653 Query 196196 GAGTTAAACTCTGATTTGTTTAGGAAGTGTA---TGGAACCTGTTGAACAAGTACTTCGT 196252 ||| | || | | ||| | ||| | | | || || || | ||| || || Sbjct 3423652 GAGCTCAA--CGGCGTTGCCT-TCAAGGGCACGCTCGACCCCGTCGCACAGGTTCTCAAG 3423596 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||| | |||| ||| || || || || ||||| || || || || |||||| Sbjct 3423595 GACTCTGGTCTGGACAAGAGCGCCGTCGACGAGATCGTCCTGGTTGGCGGTTCCACCCGT 3423536 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 || || || || || |||| ||||||||| || | | | || | Sbjct 3423535 ATCCCCCGTATCCAGAAGCTGCTGAGCGACTTCTTCAACGGCAAGAAGCTCGAGAAGAGC 3423476 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGG 196431 |||||||| ||||| || ||||| || ||||| ||||| ||||| | ||| || || || Sbjct 3423475 ATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCCGTCCAGGCCGGTATCCTGTCGGG 3423417 >seq22 Length=1908885 Score = 196 bits (216), Expect = 6e-45 Identities = 183/233 (79%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||||||||| || || || || || || || ||||| |||||||| |||| Sbjct 663118 GTGGTATGCAAATCTTTGTCAAGACACTCACCGGCAAGACCATCACTCTCGAGGTCGAGT 663059 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| ||||| ||||| || |||| ||||||||| || ||||| ||||| || || | Sbjct 663058 CGTCCGACACGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCGCCAG 662999 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || || || |||||||| || ||||| || ||||| || ||||| | || | Sbjct 662998 ACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACT 662939 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || |||||||||||||| ||||| ||||| | || || |||||| Sbjct 662938 ACAACATCCAGAAGGAGTCTACTCTCCACCTGGTTCTCCGCCTGCGTGGTGGT 662886 Score = 163 bits (180), Expect = 4e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || ||||||||||| ||||| |||||||| Sbjct 1643957 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 1644016 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| |||||| || || ||||| |||||||| || || ||| Sbjct 1644017 GACACTATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 1644076 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || ||||| || ||||| | || |||||| Sbjct 1644077 CAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGACTACAAC 1644136 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || |||||| || || ||||| || || |||| || ||||| || Sbjct 1644137 ATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGGCTCCGTGGTGGCGC 1644186 Score = 159 bits (176), Expect = 5e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||||||||| || || || || || || || || || | || ||||||| Sbjct 662890 GTGGTATGCAAATCTTTGTCAAGACACTCACCGGCAAGACGATTACGTTGGAAGTTGAGT 662831 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| ||||||||||| ||| | || | ||||| ||||| ||||| || || || |||| Sbjct 662830 CGTCTGACACAATCGACAACGTAAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCG 662771 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || || ||||| || || || ||||| || || || || || || |||| | Sbjct 662770 ACCAGCAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGGACACTGTCTGACT 662711 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || |||||||| || || ||| | || || | || || |||||| Sbjct 662710 ACAACATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGT 662658 Score = 152 bits (168), Expect = 7e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| || || || || ||||| || || || || || || || || || || | Sbjct 662662 GTGGTATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACGCTGGAAGTGGAAT 662603 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||||||||| ||| |||| | |||||||| || ||||| |||||||| || | Sbjct 662602 CTTCGGACACAATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCTG 662543 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || || ||||| || || || ||| | |||||||| || || || | || | Sbjct 662542 ACCAGCAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGGACGCTGTCGGACT 662483 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 ||||| |||| |||||||| || || ||||| || || Sbjct 662482 ACAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 662446 >seq11 Length=5116797 Score = 156 bits (172), Expect = 6e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930 || ||||| ||||| || || || || |||||||||||||| ||||| || ||||| ||| Sbjct 2814963 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 2814904 Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990 || || |||| |||||| || || ||||| ||||| || || || ||||| || || Sbjct 2814903 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTG 2814844 Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAG 172050 || |||||||| || ||||| || ||||| || || || | || |||||| | || ||| Sbjct 2814843 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAGAAG 2814784 Query 172051 GAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| || || ||||| || || | || || |||||| Sbjct 2814783 GAGTCCACCCTCCACCTGGTGCTCCGCCTGCGTGGTGGT 2814745 Score = 109 bits (120), Expect = 7e-19 Identities = 216/314 (69%), Gaps = 12/314 (4%) Strand=Plus/Plus Query 198549 ATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGT 198608 |||||||| ||||| | ||| | || | || ||||| ||||| || | || || Sbjct 4553652 ATCCCACGCGGTGCCATCCTCTCGGGACCGCCTGGTACCGGTAAGACGTTGCTGGCCAAG 4553711 Query 198609 GCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG---CGAGTTTCATC 198665 || | || || || ||| | || |||||| ||||| | || |||| |||||| | || Sbjct 4553712 GCGACGGCCGGCGAGTCGGGCGTGCCCTTT-TTCAGCG-TCAGCGGTTCCGAGTT-CGTC 4553768 Query 198666 GAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAA 198725 |||||||| || ||||| |||||| ||| ||||| || ||||||| || || | Sbjct 4553769 GAGATGTTTGTCGGTGTCGGTGCTTCGCGTGTCCGCGACCTCTTTGCCACGGCCCGCAAG 4553828 Query 198726 AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGTAAGAAGCGTGGTGGA 198785 || || || |||||||||||||| ||||| ||||| ||||| | |||||| | | Sbjct 4553829 AACGCGCCCTGCATCATCTTCATTGACGAGATCGACGCCATTGGTCGGTCGCGTGGCGAA 4553888 Query 198786 -ACTACTACACCT-----GGTAATGATGAGCGTGAGCAGACGATTAACCAGCTTCTCACT 198839 | || || | || || || ||||| ||| || | |||||| | ||||| Sbjct 4553889 GGCCGCTTCAGTTCTGGCGGCAACGAAGAGCGCGAGGCTACCCTCAACCAGATCCTCACC 4553948 Query 198840 GAGATGGATGGTTT 198853 |||||||| || || Sbjct 4553949 GAGATGGACGGCTT 4553962 Score = 86.0 bits (94), Expect = 8e-12 Identities = 179/263 (68%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 195725 CCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGT 195784 || || ||||||| || || || ||||| || |||||||| | | || || || Sbjct 1200143 CCGGCCTACTTCAACGACAACCAGCGCCAGGCTACCAAGGACGCCGGTATCATCGCTGGC 1200202 Query 195785 CTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGAC 195844 || ||| ||| | || |||| || || || ||||| || ||||| || ||||||||| Sbjct 1200203 CTGAACGTTCTGCGTATCGTCAACGAGCCCACCGCGGCCGCCATTGCCTACGGTCTGGAC 1200262 Query 195845 AAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGAT 195904 |||| | | | || || | || |||| | | || || ||||| ||||| || ||| Sbjct 1200263 AAGACCGACGGCG-AGCGCCAGAT-CATTG-TGTACGACCTTGGTGGCGGTACTTTCGAT 1200319 Query 195905 GTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACT 195964 || || || || || || || | ||||| || || || |||||||| || Sbjct 1200320 GTGTCCCTGCTTTCCATCGACCAGGGCGTGTTCGAGGTTCTCGCGACGGCTGGTGACACC 1200379 Query 195965 CATCTAGGTGGTGAAGATTTCGA 195987 || || |||||||| |||||||| Sbjct 1200380 CACCTGGGTGGTGAGGATTTCGA 1200402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862046398960