Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq41 120 9e-22
seq43 113 1e-19
seq11 95.1 4e-14
>seq41
Length=3900177
Score = 120 bits (132), Expect = 9e-22
Identities = 478/748 (64%), Gaps = 11/748 (1%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || |||||||| ||||| ||| || || |||||| || | |||||||||||
Sbjct 917903 GTACTCGACAATCTCCGTGCACAAGTTCGAGCTGCGGATGGTACCCAGGTTCTTCTGGTT 917962
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| || |||||||| || ||| | ||| | || |||||| |||| ||
Sbjct 917963 GCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGC 918022
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|||||||| ||| || | |||| || || | |||| | || ||
Sbjct 918023 CTCCAGAATGGCATACCACAGCTTCTGGGCCTTGATCTTCTTGCGACCGCGACCCTCGCG 918082
Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869
||| |||||| ||||| | | ||||| ||||| |||||| ||| || | |||
Sbjct 918083 CTCGTATTTCTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCGGCGCA 918142
Query 155870 CTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATAC 155926
| | |||||| | ||||| ||| || || | | |||||| ||| || |
Sbjct 918143 TTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCA---CACGCTTCATGAACAG 918199
Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986
|| ||| | || |||||| || | || |||||| | ||| || ||
Sbjct 918200 GTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTT 918259
Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046
|||||| || || | ||| || | ||| | ||| ||||||| || || ||| |
Sbjct 918260 CTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGAT-GCAGA 918318
Query 156047 ACT-ACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102
| ||| || |||| ||||||||||| || || || || || || ||||||||||
Sbjct 918319 ATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACAC 918378
Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162
||||| || || || || ||||| ||||| || || ||| ||| | || || | |
Sbjct 918379 GAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAG 918438
Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222
|||| ||| | || || || || ||||| | | || || || || ||
Sbjct 918439 CACGAATGCGATGGACATTCAGACCGATGCCACCAGCCGTCTTGGAGATCATGGCACACG 918498
Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282
||| | || | | | || || ||||| |||||| | ||| || || |||| |
Sbjct 918499 TCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGCAGG 918558
Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342
| | |||| | || || || |||||||| || || || | ||||| ||||
Sbjct 918559 AGGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAGA 918618
Query 156343 ACTTATTAGACATATAATCGTATGTCTC 156370
|||| || ||||| || | |||||||||
Sbjct 918619 ACTTGTTCGACATGTAGTTGTATGTCTC 918646
>seq43
Length=799317
Score = 113 bits (124), Expect = 1e-19
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490
|| |||| ||| ||||| || | ||| | || || |||| ||| | ||||||
Sbjct 314143 TGCACGCGGTACGCATCCGAGACCTCAAACAGACGCTCCTTTAGGAACGCCGCCGCACCG 314202
Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550
|| | |||||||||||||||||||||||||||||||||||||||||| || ||||| | |
Sbjct 314203 TGCGCAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCGTCACGAGCACGA 314262
Query 251551 CCCTCGGCAGGCTGACGAGT 251570
|||||| | ||||| || ||
Sbjct 314263 CCCTCGACCGGCTGCCGCGT 314282
>seq11
Length=5116797
Score = 95.1 bits (104), Expect = 4e-14
Identities = 203/299 (68%), Gaps = 6/299 (2%)
Strand=Plus/Minus
Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630
|||||||| ||||| | || |||||||| ||||| || | || || || ||
Sbjct 3841876 GTCTTCCAGCGCCTTGACCAGTCGGCGCTGAATGTAACCCGTCTCGGCCGTCTTGACGGC 3841817
Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA- 302689
|| ||||| ||||| |||||||| |||| || |||||||| | || || ||||
Sbjct 3841816 CGTGTCAATGAGACCTTCACGACCAGCCATGGCGTGGAAGAAAAATTCAGTGGG-CGTAA 3841758
Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749
| || | | | ||| |||| || || ||||| || |||||||| | |||| |||||
Sbjct 3841757 GACCACGCAGGTACGAGTTCTCGACAAAGCCACGGGCTTCGGGCGAGTAGTCGTCCTTGG 3841698
Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809
||||||| |||| || | || || | || | || ||||| || || || | |
Sbjct 3841697 TAAAGTGAGGCAACGTGCGGTACTTGAATCCAAAAGGAATACGACGACCTTCCACAATTT 3841638
Query 302810 GCTGTCCCAGGCACGA--AATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866
|||| |||| || || ||||||||||||| || | | |||||||| ||||
Sbjct 3841637 GCTGACCCA--CAAGAGCTGTCATCTGCGAAATGTTGATAGACGAACCCTTGGAACCAG 3841581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471816789120491
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |