Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq41 120 9e-22 seq43 113 1e-19 seq11 95.1 4e-14 >seq41 Length=3900177 Score = 120 bits (132), Expect = 9e-22 Identities = 478/748 (64%), Gaps = 11/748 (1%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || |||||||| ||||| ||| || || |||||| || | ||||||||||| Sbjct 917903 GTACTCGACAATCTCCGTGCACAAGTTCGAGCTGCGGATGGTACCCAGGTTCTTCTGGTT 917962 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || |||||||| || ||| | ||| | || |||||| |||| || Sbjct 917963 GCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGC 918022 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 |||||||| ||| || | |||| || || | |||| | || || Sbjct 918023 CTCCAGAATGGCATACCACAGCTTCTGGGCCTTGATCTTCTTGCGACCGCGACCCTCGCG 918082 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| |||||| ||||| | | ||||| ||||| |||||| ||| || | ||| Sbjct 918083 CTCGTATTTCTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCGGCGCA 918142 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATAC 155926 | | |||||| | ||||| ||| || || | | |||||| ||| || | Sbjct 918143 TTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCA---CACGCTTCATGAACAG 918199 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 || ||| | || |||||| || | || |||||| | ||| || || Sbjct 918200 GTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTT 918259 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 |||||| || || | ||| || | ||| | ||| ||||||| || || ||| | Sbjct 918260 CTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGAT-GCAGA 918318 Query 156047 ACT-ACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 | ||| || |||| ||||||||||| || || || || || || |||||||||| Sbjct 918319 ATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACAC 918378 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| || || || || ||||| ||||| || || ||| ||| | || || | | Sbjct 918379 GAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAG 918438 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 |||| ||| | || || || || ||||| | | || || || || || Sbjct 918439 CACGAATGCGATGGACATTCAGACCGATGCCACCAGCCGTCTTGGAGATCATGGCACACG 918498 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 ||| | || | | | || || ||||| |||||| | ||| || || |||| | Sbjct 918499 TCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGCAGG 918558 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342 | | |||| | || || || |||||||| || || || | ||||| |||| Sbjct 918559 AGGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAGA 918618 Query 156343 ACTTATTAGACATATAATCGTATGTCTC 156370 |||| || ||||| || | ||||||||| Sbjct 918619 ACTTGTTCGACATGTAGTTGTATGTCTC 918646 >seq43 Length=799317 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490 || |||| ||| ||||| || | ||| | || || |||| ||| | |||||| Sbjct 314143 TGCACGCGGTACGCATCCGAGACCTCAAACAGACGCTCCTTTAGGAACGCCGCCGCACCG 314202 Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550 || | |||||||||||||||||||||||||||||||||||||||||| || ||||| | | Sbjct 314203 TGCGCAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCGTCACGAGCACGA 314262 Query 251551 CCCTCGGCAGGCTGACGAGT 251570 |||||| | ||||| || || Sbjct 314263 CCCTCGACCGGCTGCCGCGT 314282 >seq11 Length=5116797 Score = 95.1 bits (104), Expect = 4e-14 Identities = 203/299 (68%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 |||||||| ||||| | || |||||||| ||||| || | || || || || Sbjct 3841876 GTCTTCCAGCGCCTTGACCAGTCGGCGCTGAATGTAACCCGTCTCGGCCGTCTTGACGGC 3841817 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA- 302689 || ||||| ||||| |||||||| |||| || |||||||| | || || |||| Sbjct 3841816 CGTGTCAATGAGACCTTCACGACCAGCCATGGCGTGGAAGAAAAATTCAGTGGG-CGTAA 3841758 Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749 | || | | | ||| |||| || || ||||| || |||||||| | |||| ||||| Sbjct 3841757 GACCACGCAGGTACGAGTTCTCGACAAAGCCACGGGCTTCGGGCGAGTAGTCGTCCTTGG 3841698 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 ||||||| |||| || | || || | || | || ||||| || || || | | Sbjct 3841697 TAAAGTGAGGCAACGTGCGGTACTTGAATCCAAAAGGAATACGACGACCTTCCACAATTT 3841638 Query 302810 GCTGTCCCAGGCACGA--AATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866 |||| |||| || || ||||||||||||| || | | |||||||| |||| Sbjct 3841637 GCTGACCCA--CAAGAGCTGTCATCTGCGAAATGTTGATAGACGAACCCTTGGAACCAG 3841581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816789120491