Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq41 159 3e-34 seq22 134 1e-26 >seq41 Length=3900177 Score = 159 bits (176), Expect = 3e-34 Identities = 1052/1671 (63%), Gaps = 50/1671 (3%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGA 138417 ||||||||||| |||||||| ||| | || | | ||| || | | ||| || || Sbjct 917148 ATCTCCCACACCGTCTTGTACAGAGCCTTGATGTCTGCCGGGATGTTGGGAATGTTCTGG 917207 Query 138418 ATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTG 138477 || ||||| | ||||||||||| || |||||| || ||||| || | | Sbjct 917208 ATCGAACCGTTCTCGGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGTCG 917267 Query 138478 ATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGA 138537 | || ||| || | ||| | ||| | ||||| || |||||||||| || || || Sbjct 917268 ACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCACCGGCCAGCACACGCCGC 917327 Query 138538 ACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTG 138597 |||||||||| ||| | ||||| || | |||||||| ||||||||||| | ||| Sbjct 917328 GAGTAAATGTTGGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGACGTC 917387 Query 138598 GTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGT 138657 | ||| |||||||| |||||||| ||| || || | |||||| |||||| | Sbjct 917388 GACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGAT--CT 917445 Query 138658 TC--CTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 || | ||||| ||| ||||||| || || | | |||||| ||| || Sbjct 917446 TCAGCCGCAGCGAGTCCCAATCCCACAGGTCCGATGGCGTGACATCCCACATGTCGGGCT 917505 Query 138716 GTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTA--TACACCAAACTCTTG 138773 | | || ||| | ||| || || || | | ||| | | || | ||||| Sbjct 917506 GCAGAATACCCTGCGACACAGGAGACCCCTCATATGTCTGGTAGGTGC-CCTCAATCTTG 917564 Query 138774 CGCCAACTCGTTGCTCGCCTC---GAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTG 138830 |||| ||| || || ||| ||||| | | ||| || || || | ||||| Sbjct 917565 -GCCAGCTC---GCACGACTCCGTCAGCGCCGCGTGGTAGATGGTCTCAAAGACCTGCTT 917620 Query 138831 ATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGC 138890 || |||| || ||||||| ||| | |||||||| ||| | ||| ||||| || Sbjct 917621 GTTCAGCAGGCGTGCCTCGGGAGACTCAAAGGGCATGCGCAGCGCCAGGAAGGCGTCCGC 917680 Query 138891 CAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTT 138949 ||| || ||||| |||| || | || || ||||||| || || || || |||| Sbjct 917681 CAGACCCTGCACACCCAGACCAATGGGACGGTGGCGCA----TGTTACTGTTCCGTGCTT 917736 Query 138950 C---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAG 139006 | | ||| || ||||| ||||| ||||| ||| | || || || |||| || | Sbjct 917737 CTGGCACAGGGTAGTAGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCAGCTGCG 917796 Query 139007 TCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAA 139066 | || | | || | || || || | | |||||| | | ||||| || Sbjct 917797 TGACATCGTGCAGTCTCTGGAAGTCATACG---ACTCGTTGTTATAGTCGACG----AAA 917849 Query 139067 ATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATT 139126 | || |||| ||||| | ||||||||| ||||| ||||| || | ||| | Sbjct 917850 GACGGAAGAGCCAAA--GAGGCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGAGTACT 917907 Query 139127 CGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTT 139186 ||||||| || | ||||| || | ||| ||||| | || | || ||||| | Sbjct 917908 CGACAATCTCCGTGCACAAGTTCGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCT 917967 Query 139187 TTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTA 139246 | ||||| || || ||||| ||||| | || |||| || ||| || | ||| | Sbjct 917968 TGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCCA 918027 Query 139247 TAATGAATTTGAACAAGTCCCTAG-CTTG-TATT-TGACGCACGTAAAGTTCGTCGCGCT 139303 |||| | ||| | | | |||| | || | || || | | ||||||| Sbjct 918028 GAATGGCATACCACAGCTTCTGGGCCTTGATCTTCTTGCGACCG---CGACCCTCGCGCT 918084 Query 139304 CGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACT 139363 |||| || ||||| || | || || || |||||| |||| || || || | Sbjct 918085 CGTATTTCTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCGGCGCATT 918144 Query 139364 TGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCG 139423 || || ||||| |||| ||| |||||||| || || ||| |||||||||| || | Sbjct 918145 CGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGG 918204 Query 139424 GAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTT 139483 | ||||| | |||| | | ||| || || || ||| || ||| Sbjct 918205 GGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTCTTCC 918264 Query 139484 TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGC 139543 || || ||||| ||||| || || || ||||| || |||| |||||| | ||| | Sbjct 918265 GCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATGCAGAATGCAC 918324 Query 139544 CTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACA 139600 | ||| |||||||| ||||| |||| || | | || ||||| || || | || Sbjct 918325 CGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCA 918384 Query 139601 TCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGCGAGCTCG 139658 | || | ||| | | ||| ||||| |||| ||| ||| | | | ||| || Sbjct 918385 TGGGGATGATGCCGTTGGATGTGCCGTTAGTGC--CGGCAATGTAAGAGCCGGTAGCACG 918442 Query 139659 GACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGC 139717 | | ||| ||||| | ||||| || || | ||||| || | | || || Sbjct 918443 AATGCGATGGACATTCAGACCGATGCCACCAGCCGTCTTGGAGATCATGGCACACGTCTT 918502 Query 139718 GTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACG 139777 | | || ||||| || || ||||| || |||| ||| || || ||||| || | Sbjct 918503 G-AGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGCAGGAGG 918561 Query 139778 AAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTT 139837 | || || | | ||||||||| || || || || || ||||| || | | Sbjct 918562 ACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAGAACT 918621 Query 139838 GTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGA 139897 |||||||| | | ||| || |||| | | | | | ||| || |||||| | Sbjct 918622 TGTTCGACATGTAGTTGTATGTCTCGACAACACGCTCCACATCATCGCCCCAGATACCAA 918681 Query 139898 CAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCA 139957 | | || ||||| | ||| || || ||| ||| | | | || |||| || | Sbjct 918682 CGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTACCATCGAGCTTGAGGA 918741 Query 139958 GATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 | || |||| ||| ||||||||| |||||||||| |||||||| || Sbjct 918742 GGTAGGACCG--CTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTC 918790 >seq22 Length=1908885 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || ||||| || || |||||| | ||||| || | | Sbjct 662885 ATGCAAATCTTTGTCAAGACACTCACCGGCAAGACGATTACGTTGGAAGTTGAGTCGTCT 662826 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | ||||| |||||||||||||| || || || |||||||| || Sbjct 662825 GACACAATCGACAACGTAAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAG 662766 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA-TTCGAGAAACATGTCAGATTATAA 24882 || || |||| || || || || ||||||||||| | || || |||| || || || Sbjct 662765 CAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGGACAC-TGTCTGACTACAA 662707 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || ||||||||| |||| |||| || || Sbjct 662706 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 662659 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || ||||| || || || || || | Sbjct 1643954 ACCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 1644013 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||||| | || | || || |||||||| ||||| || || || || || || Sbjct 1644014 TCCGACACTATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAC 1644073 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||| || || || |||||||||||| | | | |||| || || Sbjct 1644074 CAGCAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGACTAC 1644133 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||| || ||||| || || ||| ||||| |||| | || || |||| Sbjct 1644134 AACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGGCTCCGTGGTGGCG 1644185 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || || || || || || | || Sbjct 663341 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCC 663282 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || || || || || Sbjct 663281 GATACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 663222 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||| ||||||| | | | | || || || ||| Sbjct 663221 CAGCGCCTGATCTTTGCTGGCAAGCAGTTGGAGGACGGTCGCACCCTCTCCGACTACAAC 663162 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| ||||| | || | ||||| || Sbjct 663161 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTCCGCGGTGG 663115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897358180040