Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq22 145 5e-30 seq11 120 2e-22 >seq22 Length=1908885 Score = 145 bits (160), Expect = 5e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 663130 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCC 663189 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || |||||||| || ||||||||| |||| | ||||||||||| Sbjct 663190 TCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 663249 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| |||| ||| |||||| Sbjct 663250 TGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGTGATGGTC 663309 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || ||||| ||||| || |||||||||||||| Sbjct 663310 TTGCCGGTGAGCGTCTTGACGAAGATCTGCATGAT 663344 Score = 145 bits (160), Expect = 5e-30 Identities = 166/221 (75%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 || ||| |||||||| | |||||||||||||| ||||| ||||| || ||| | || | Sbjct 1644172 CCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCC 1644113 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| ||||| ||||| || ||||||||||| || ||||||||| | || | |||||||| Sbjct 1644112 ATCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTT 1644053 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGG 34937 ||| | || || ||||| || | ||||| || | ||| || |||| || Sbjct 1644052 GTCCTGGATCTTGCTCTTGAC--AT--TGTCGATAGTGTCGGACGACTCCACCTCAAGGG 1643997 Query 34938 TTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || ||||| ||||| |||||||| || |||||||||||| Sbjct 1643996 TGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 1643956 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 662902 AGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 662961 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || |||||||| || ||||||||| |||| | ||||||||||| Sbjct 662962 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 663021 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | |||| || | |||||| || | || |||||| Sbjct 663022 TGAATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTC 663081 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| |||||||| ||||| Sbjct 663082 TTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 663113 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||||||||| |||||||| || | || |||| Sbjct 662445 CAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCATC 662504 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || ||||| ||||| || |||||||| |||| | ||||||||||| Sbjct 662505 TTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTC 662564 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | || || || | || || || Sbjct 662565 CTGAATCTTCGACTTGACGTTGTCGATTGTGTCCGAAGATTCCACTTCCAGCGTAATCGT 662624 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| |||||||| || || |||||||| Sbjct 662625 CTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | || ||||||||| ||||| ||||| || || | || | || Sbjct 662673 CAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGACAGTGTCCGGCCGTC 662732 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||| ||||| || |||||||| | || | ||||||||||| Sbjct 662733 CTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTC 662792 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | ||| | ||| || || | || || || Sbjct 662793 TTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAACTTCCAACGTAATCGT 662852 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || ||||| ||||| |||||||| ||||| Sbjct 662853 CTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 >seq11 Length=5116797 Score = 120 bits (132), Expect = 2e-22 Identities = 152/207 (73%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||||||||| ||||| ||||| || || | || |||| Sbjct 2814761 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCC 2814820 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || |||||||| || |||||||| |||| | ||||||||||| Sbjct 2814821 TCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 2814880 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || |||||| || | ||| || Sbjct 2814881 TGGATCTTGCTCTTGAC--AT--TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 2814936 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAA 34968 |||||| |||||||||||||| || || Sbjct 2814937 GGTCTTGCCCGTGAGGGTCTTCACGAA 2814963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692629316617