Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq22 98.7 8e-16
>seq22
Length=1908885
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| |||||||| || | || ||||| || ||||| | ||| ||| |
Sbjct 662885 ATGCAAATCTTTGTCAAGACACTCACCGGCAAGACGATTACGTTGGAAGTTGAGTCGTCT 662826
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | ||||| ||||| || || || || | || || |||
Sbjct 662825 GACACAATCGACAACGTAAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAG 662766
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || |||| ||||| || ||||||||||||| | ||| || | |||||||||
Sbjct 662765 CAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGGACACTGTCTGACTACAAC 662706
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
|| || |||||||| ||| ||||| ||||| || | |||| || ||
Sbjct 662705 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 662659
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||| ||||| || | || || || || ||||| | ||| ||| ||
Sbjct 662657 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACGCTGGAAGTGGAATCTTCG 662598
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || |||||| || || || ||| | || || |||
Sbjct 662597 GACACAATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAG 662538
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || |||| ||||| || ||| |||| || | | || || |||||||||||
Sbjct 662537 CAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGGACGCTGTCGGACTACAAC 662478
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||| |||||||| ||| ||||| ||||| || | |||| || ||
Sbjct 662477 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGCGG 662431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398876590963627
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |