Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq22 129 1e-24 >seq22 Length=1908885 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || |||||||| || || || ||||| || || || |||| Sbjct 662657 TACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAG 662716 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || || || || || || || || | || || || |||| Sbjct 662717 ACAGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAG 662776 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| | ||||| || || || || ||| | || | Sbjct 662777 GGATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAA 662836 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || ||||||||||| || | ||||| ||||| || ||||| Sbjct 662837 CTTCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 Score = 114 bits (126), Expect = 3e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || ||||| | ||| |||||||| || ||||| || || || || | Sbjct 662885 TACCACCACGCAGGCGGAGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 662944 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || || ||||||||||| || | || || ||||| | Sbjct 662945 AAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCG 663004 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || |||||| ||||| || ||||| || ||||| || | || Sbjct 663005 GGATGCCCTCCTTGTCCTGAATC-TTGCTCTTGACATTGTCGATCGTGTCGGACGACTCG 663063 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||| || |||||||| || | ||||| ||||| || ||||| Sbjct 663064 ACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 663113 Score = 113 bits (124), Expect = 9e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || || || || ||||| || || || || | Sbjct 663113 TACCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 663172 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||| || | || || ||||||||||| || | || || ||||| | Sbjct 663173 AGAGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCG 663232 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||| | || || || ||||| ||||| || || | Sbjct 663233 GGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGA 663292 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 | || | || || |||||||| || | |||||| || || |||||||| || Sbjct 663293 CCTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATGAT 663344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826659074577