Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq22 109 4e-19
>seq22
Length=1908885
Score = 109 bits (120), Expect = 4e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||||| || || ||| ||| || || |||||||| |||||
Sbjct 663114 ACCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 663173
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| ||||| |||| ||||| || || || ||||| |||| |||||||| ||| ||||
Sbjct 663174 GAGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGG 663233
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700
| || || ||||| ||| || || | | | |||| ||| ||| || || |
Sbjct 663234 GATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCAATGGTATCGGAAGACTCGA 663292
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| |||| ||||| || || || || | ||| || || |||||||||||
Sbjct 663293 CCTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341
Score = 93.3 bits (102), Expect = 3e-14
Identities = 153/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| || || |||||||| || || |||||||| ||||| || || || | || ||
Sbjct 1644166 CACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTC 1644107
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
|| || || || || || |||| |||||||| ||| | || | || || |||||
Sbjct 1644106 CAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 1644047
Query 33660 AATTTT-CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717
|| || || || |||| ||| | |||||| || ||||| |||| ||||| ||
Sbjct 1644046 GATCTTGCTCTTG--ACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 1643989
Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754
|| || || | || || || ||||||||||| ||||
Sbjct 1643988 TTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGTTG 1643952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703827738560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |