Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq22 114 3e-20 >seq22 Length=1908885 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || ||||| || ||||||||||| ||| ||| Sbjct 662654 CAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACGCTGGAAGTGGAATCTTCGGAC 662595 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| |||||||| || || || || ||| ||| ||| || Sbjct 662594 ACAATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAGCAG 662535 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || ||||||||||||||||| |||| || | || |||||| | Sbjct 662534 CGCCTGATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGGACGCTGTCGGACTACAACATT 662475 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 662474 CAGAAGGAGTCGACGCTGCACCTGGT 662449 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || ||||| || || || |||||| | || || || || ||| Sbjct 663110 CAAATCTTTGTCAAGACACTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGAC 663051 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || ||| ||| || Sbjct 663050 ACGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAGCAG 662991 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | || ||||| | || | |||| |||||| || Sbjct 662990 CGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATC 662931 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||||||||| ||||| ||| Sbjct 662930 CAGAAGGAGTCTACTCTCCACCTGGTT 662904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820148890603