Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq41 183 4e-40
seq42 154 2e-31
seq11 127 3e-23
seq40 91.5 2e-12
seq38 86.0 9e-11
>seq41
Length=3900177
Score = 183 bits (202), Expect = 4e-40
Identities = 347/508 (68%), Gaps = 27/508 (5%)
Strand=Plus/Minus
Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740
||||||||||| | | ||| | ||||| | ||| ||| ||||| |||| |||||
Sbjct 918830 GCACAAGGAGGACTTTGACTCGGCCATTGTCTACGACCGGGACTTCAACTACCAATACTT 918771
Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTG---TCGTCGA 259797
||| | |||| || ||||||||||| ||| || |||| | |||||||
Sbjct 918770 TGGCTTCAAGACCCTGGAGCGGTCCTACCTCCTCAA---GCTCGATGGTAAGATCGTCGA 918714
Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857
|||||| ||| | ||| | ||||| || ||| |||| | |||| |||
Sbjct 918713 GCGGCCGCAGCACATGATTATGCGCGTGGCCGTTGGTA--TCTGGGG----------CGA 918666
Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTC 259917
||| |||||| || ||| || ||| | ||||||| | |||| || ||
Sbjct 918665 TGATG---TGGAGCGTGTTGTCGAGACATACAACTACATGTCGAACAAGTTCTTTACGCA 918609
Query 259918 AGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCT 259977
|| |||| ||||| || || ||||||||||| | | ||| || || ||||| ||
Sbjct 918608 TGCCTCGCCGACGCTTTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCCTCCTGCTTCCT 918549
Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037
| |||||||||| ||| || ||||||||||| |||||||||||| ||| || |
Sbjct 918548 CGTAGACATGAAGGATGATAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCAT 918489
Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTT---TGCCGCACACAAGGTGCGCGCCGCGGG 260094
||||||||| |||| || ||||||||| | || | | || | || || | ||
Sbjct 918488 GATCTCCAAGACGGCTGGTGGCATCGGTCTGAATGTCCATCGCA---TTCGTGCTACCGG 918432
Query 260095 CGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTT 260154
| | ||| | || ||||| |||||| ||||||||| | | ||||||||||| || ||
Sbjct 918431 CTCTTACATTGCCGGCACTAACGGCACATCCAACGGCATCATCCCCATGCTTCGTGTCTT 918372
Query 260155 TAACGACACGGCGCGCTACGTCGACCAG 260182
||| ||||||| |||||||| || |||
Sbjct 918371 CAACAACACGGCCCGCTACGTGGATCAG 918344
Score = 91.5 bits (100), Expect = 2e-12
Identities = 123/169 (73%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156
|||| |||||| | | ||| || | ||||| |||| |||| |||| |||||||||||
Sbjct 918040 TGGTATGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCCTTCATGCTCTACAAGGAC 917981
Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTG 262215
| ||||| | ||||||||| |||||||||| |||| | ||| | ||| ||||
Sbjct 917980 CACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCCGCAG-CTCGAACTTGTG 917922
Query 262216 CACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAAC 262264
||| ||||| ||| ||| ||| | || ||||| ||||||||||
Sbjct 917921 CACGGAGATTGTCGAGTACTCGGCTCCGGACGAGGTGGCTGTGTGCAAC 917873
Score = 87.8 bits (96), Expect = 3e-11
Identities = 69/80 (86%), Gaps = 2/80 (3%)
Strand=Plus/Minus
Query 1817551 GTGTGCGTCACCTCGGCGCGCGCGTCT-CAGACTGGGGCACATGGAGGTTCATCTCGTCG 1817609
|||| |||| |||| ||||| || ||| | | ||| |||||||| | |||||||||||||
Sbjct 231933 GTGT-CGTCGCCTCTGCGCGTGCCTCTTCGGTCTGCGGCACATGCAAGTTCATCTCGTCG 231875
Query 1817610 CCGTCAAAGTCGGCATTGTA 1817629
||||||||||||||||||||
Sbjct 231874 CCGTCAAAGTCGGCATTGTA 231855
>seq42
Length=705881
Score = 154 bits (170), Expect = 2e-31
Identities = 238/335 (71%), Gaps = 5/335 (1%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||| |||||| ||||| ||||| ||||||||| | || |
Sbjct 322263 GATCTGGCAGATGTAC-AAGAAGCACGAGGCTTCCTTCTGGACGGCCGAGGAGATTGATC 322205
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891
| | ||| | | ||||| ||| ||| |||||||||||| ||||||
Sbjct 322204 TGTCCAAGGACCTGCACGACTGGCACAACCGCCTGAACGACGACGAGCGTTTCTTCATCT 322145
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||| | |||||||| || ||| ||| ||||||||||| ||||||||| | ||
Sbjct 322144 CCCACATTCTCGCCTTCTT-CGCTGCCTCTGATGGCATCGTCAACGAGAACCTCGTCGAG 322086
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||| | |||||||| |||| ||||| || | || || || |||||||||
Sbjct 322085 CGCTTCAGCGCTGAGGTCCAGGTGCCTGAGGCTCGCTGCTTCTATGGCTTCCAGATCATG 322026
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
|| || ||||||||||| || || ||||| || || || ||||||||| ||||||| ||
Sbjct 322025 ATGGAGAACATCCACTCGGAGACGTACTCTCTGCTCATTGACACCTACATCAAGGAGCCC 321966
Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106
||| |||||||| || |||||| || ||
Sbjct 321965 AAGGAGCGCGACCACCTTTTCAACGCCATTGATAC 321931
Score = 122 bits (134), Expect = 1e-21
Identities = 182/253 (72%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|| || ||||| || ||| |||| ||| | ||||| | | ||| | |||||| ||
Sbjct 321596 ATTATTGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCTCTGCCGTGTGCT 321537
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| | ||||||||| ||||| |||||| ||||||||||| ||| || |||||||| |
Sbjct 321536 CTGCTGGGCATGAACTCCACC-CTCATGAAGCAGTACATTGAGTTT-GTTGCCGACCGTC 321479
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
|||| | || |||||| || | ||| ||||| | ||||||| ||| | |||
Sbjct 321478 TGCTGGTCGCCCTCGGCAACG-ACAAGGTGTACCGTTCCACCAACCCCTTCGACTTTATG 321420
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| ||||| || | |||||||||||||| || ||| ||||| || || |||
Sbjct 321419 GAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTACCAG 321360
Query 1456762 AAGGCCGGCGTCA 1456774
|||||||| ||||
Sbjct 321359 AAGGCCGGTGTCA 321347
>seq11
Length=5116797
Score = 127 bits (140), Expect = 3e-23
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911
|| ||||| ||||| ||| | | ||||| |||||||| || |||||| | ||| |||
Sbjct 2677825 TGCGCGTCCGTGAGTCGCGCGTACCGCAGAATGGCACATCGCGACTGCAGCGGCTCAATG 2677766
Query 332912 ACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATG 332971
| | | |||| |||||| || | ||||||||||||||||| | | | |||||
Sbjct 2677765 ATCTTGTTCGACTGGTTGCACGCAAATGCAAACCGCGTCGTATTCGAGTAGATCTCCATC 2677706
Query 332972 GTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATG 333031
||| ||| || ||||| || || ||| ||| | || ||| |||||||| |||||||
Sbjct 2677705 GTCCGCCGCAGCGCCTGCTGCGCTCCCGACGTCATGCTGTCTGCCTCGTCCAGGATGACA 2677646
Query 333032 ATCTTGTGGCGCCCGTGCGGCAG 333054
|||||||| |||||| ||||||
Sbjct 2677645 ATCTTGTGCCGCCCGGCCGGCAG 2677623
>seq40
Length=2234633
Score = 91.5 bits (100), Expect = 2e-12
Identities = 98/127 (77%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
||||||||||| || |||||||||||||||||| |||||||||| |||| |||| |||
Sbjct 1757993 GGCGCCGTCGGCGCCCGCACCACCGAGAGCCAGCTGCACCGCGAACTGGCCTCGGGCCTG 1757934
Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCA-GCGTGGCGACGGCCCTCGATGC 165886
| | || | || ||||| ||| | |||||||||| || |||| | ||| | || ||
Sbjct 1757933 TCTTTCCCTGTCGGTTTCAAGAACGGTACCGACGGCACGCTCGGCGTC-GCCATTGACGC 1757875
Query 165887 CGTGCGC 165893
| | |||
Sbjct 1757874 CATCCGC 1757868
>seq38
Length=4042462
Score = 86.0 bits (94), Expect = 9e-11
Identities = 108/145 (74%), Gaps = 4/145 (3%)
Strand=Plus/Plus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
|| ||| | || || |||||||| ||||||||| ||||||| ||| |||| |||| |||
Sbjct 3025917 GGTGCCATTGGCGCACGCACCACGGAGAGCCAGCTGCACCGGGAGCTGGCTTCGGGCCTG 3025976
Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCGACGGCCCTCGATGCC 165887
| | || | |||||||| ||| |||||||||||| | ||| ||| | || |||
Sbjct 3025977 TCCTTCCCTGTCGGCTTCAAGAACGGCACCGACGGCAACCTGGGTGTCGCCATTGACGCC 3026036
Query 165888 GT--GCGC-ACTGCCGCCCAGCCAC 165909
| |||| ||||||||| |||||
Sbjct 3026037 ATCGGCGCTGCTGCCGCCC-GCCAC 3026060
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177807052570966
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |