Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq41 183 4e-40 seq42 154 2e-31 seq11 127 3e-23 seq40 91.5 2e-12 seq38 86.0 9e-11 >seq41 Length=3900177 Score = 183 bits (202), Expect = 4e-40 Identities = 347/508 (68%), Gaps = 27/508 (5%) Strand=Plus/Minus Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740 ||||||||||| | | ||| | ||||| | ||| ||| ||||| |||| ||||| Sbjct 918830 GCACAAGGAGGACTTTGACTCGGCCATTGTCTACGACCGGGACTTCAACTACCAATACTT 918771 Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTG---TCGTCGA 259797 ||| | |||| || ||||||||||| ||| || |||| | ||||||| Sbjct 918770 TGGCTTCAAGACCCTGGAGCGGTCCTACCTCCTCAA---GCTCGATGGTAAGATCGTCGA 918714 Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857 |||||| ||| | ||| | ||||| || ||| |||| | |||| ||| Sbjct 918713 GCGGCCGCAGCACATGATTATGCGCGTGGCCGTTGGTA--TCTGGGG----------CGA 918666 Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTC 259917 ||| |||||| || ||| || ||| | ||||||| | |||| || || Sbjct 918665 TGATG---TGGAGCGTGTTGTCGAGACATACAACTACATGTCGAACAAGTTCTTTACGCA 918609 Query 259918 AGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCT 259977 || |||| ||||| || || ||||||||||| | | ||| || || ||||| || Sbjct 918608 TGCCTCGCCGACGCTTTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCCTCCTGCTTCCT 918549 Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037 | |||||||||| ||| || ||||||||||| |||||||||||| ||| || | Sbjct 918548 CGTAGACATGAAGGATGATAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCAT 918489 Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTT---TGCCGCACACAAGGTGCGCGCCGCGGG 260094 ||||||||| |||| || ||||||||| | || | | || | || || | || Sbjct 918488 GATCTCCAAGACGGCTGGTGGCATCGGTCTGAATGTCCATCGCA---TTCGTGCTACCGG 918432 Query 260095 CGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTT 260154 | | ||| | || ||||| |||||| ||||||||| | | ||||||||||| || || Sbjct 918431 CTCTTACATTGCCGGCACTAACGGCACATCCAACGGCATCATCCCCATGCTTCGTGTCTT 918372 Query 260155 TAACGACACGGCGCGCTACGTCGACCAG 260182 ||| ||||||| |||||||| || ||| Sbjct 918371 CAACAACACGGCCCGCTACGTGGATCAG 918344 Score = 91.5 bits (100), Expect = 2e-12 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| |||||| | | ||| || | ||||| |||| |||| |||| ||||||||||| Sbjct 918040 TGGTATGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCCTTCATGCTCTACAAGGAC 917981 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTG 262215 | ||||| | ||||||||| |||||||||| |||| | ||| | ||| |||| Sbjct 917980 CACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCCGCAG-CTCGAACTTGTG 917922 Query 262216 CACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAAC 262264 ||| ||||| ||| ||| ||| | || ||||| |||||||||| Sbjct 917921 CACGGAGATTGTCGAGTACTCGGCTCCGGACGAGGTGGCTGTGTGCAAC 917873 Score = 87.8 bits (96), Expect = 3e-11 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 1817551 GTGTGCGTCACCTCGGCGCGCGCGTCT-CAGACTGGGGCACATGGAGGTTCATCTCGTCG 1817609 |||| |||| |||| ||||| || ||| | | ||| |||||||| | ||||||||||||| Sbjct 231933 GTGT-CGTCGCCTCTGCGCGTGCCTCTTCGGTCTGCGGCACATGCAAGTTCATCTCGTCG 231875 Query 1817610 CCGTCAAAGTCGGCATTGTA 1817629 |||||||||||||||||||| Sbjct 231874 CCGTCAAAGTCGGCATTGTA 231855 >seq42 Length=705881 Score = 154 bits (170), Expect = 2e-31 Identities = 238/335 (71%), Gaps = 5/335 (1%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||| |||||| ||||| ||||| ||||||||| | || | Sbjct 322263 GATCTGGCAGATGTAC-AAGAAGCACGAGGCTTCCTTCTGGACGGCCGAGGAGATTGATC 322205 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | ||| | | ||||| ||| ||| |||||||||||| |||||| Sbjct 322204 TGTCCAAGGACCTGCACGACTGGCACAACCGCCTGAACGACGACGAGCGTTTCTTCATCT 322145 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| | |||||||| || ||| ||| ||||||||||| ||||||||| | || Sbjct 322144 CCCACATTCTCGCCTTCTT-CGCTGCCTCTGATGGCATCGTCAACGAGAACCTCGTCGAG 322086 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| |||| ||||| || | || || || ||||||||| Sbjct 322085 CGCTTCAGCGCTGAGGTCCAGGTGCCTGAGGCTCGCTGCTTCTATGGCTTCCAGATCATG 322026 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || || ||||| || || || ||||||||| ||||||| || Sbjct 322025 ATGGAGAACATCCACTCGGAGACGTACTCTCTGCTCATTGACACCTACATCAAGGAGCCC 321966 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106 ||| |||||||| || |||||| || || Sbjct 321965 AAGGAGCGCGACCACCTTTTCAACGCCATTGATAC 321931 Score = 122 bits (134), Expect = 1e-21 Identities = 182/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 || || ||||| || ||| |||| ||| | ||||| | | ||| | |||||| || Sbjct 321596 ATTATTGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCTCTGCCGTGTGCT 321537 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||| ||||| |||||| ||||||||||| ||| || |||||||| | Sbjct 321536 CTGCTGGGCATGAACTCCACC-CTCATGAAGCAGTACATTGAGTTT-GTTGCCGACCGTC 321479 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || |||||| || | ||| ||||| | ||||||| ||| | ||| Sbjct 321478 TGCTGGTCGCCCTCGGCAACG-ACAAGGTGTACCGTTCCACCAACCCCTTCGACTTTATG 321420 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| || | |||||||||||||| || ||| ||||| || || ||| Sbjct 321419 GAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTACCAG 321360 Query 1456762 AAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 321359 AAGGCCGGTGTCA 321347 >seq11 Length=5116797 Score = 127 bits (140), Expect = 3e-23 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911 || ||||| ||||| ||| | | ||||| |||||||| || |||||| | ||| ||| Sbjct 2677825 TGCGCGTCCGTGAGTCGCGCGTACCGCAGAATGGCACATCGCGACTGCAGCGGCTCAATG 2677766 Query 332912 ACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATG 332971 | | | |||| |||||| || | ||||||||||||||||| | | | ||||| Sbjct 2677765 ATCTTGTTCGACTGGTTGCACGCAAATGCAAACCGCGTCGTATTCGAGTAGATCTCCATC 2677706 Query 332972 GTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATG 333031 ||| ||| || ||||| || || ||| ||| | || ||| |||||||| ||||||| Sbjct 2677705 GTCCGCCGCAGCGCCTGCTGCGCTCCCGACGTCATGCTGTCTGCCTCGTCCAGGATGACA 2677646 Query 333032 ATCTTGTGGCGCCCGTGCGGCAG 333054 |||||||| |||||| |||||| Sbjct 2677645 ATCTTGTGCCGCCCGGCCGGCAG 2677623 >seq40 Length=2234633 Score = 91.5 bits (100), Expect = 2e-12 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 ||||||||||| || |||||||||||||||||| |||||||||| |||| |||| ||| Sbjct 1757993 GGCGCCGTCGGCGCCCGCACCACCGAGAGCCAGCTGCACCGCGAACTGGCCTCGGGCCTG 1757934 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCA-GCGTGGCGACGGCCCTCGATGC 165886 | | || | || ||||| ||| | |||||||||| || |||| | ||| | || || Sbjct 1757933 TCTTTCCCTGTCGGTTTCAAGAACGGTACCGACGGCACGCTCGGCGTC-GCCATTGACGC 1757875 Query 165887 CGTGCGC 165893 | | ||| Sbjct 1757874 CATCCGC 1757868 >seq38 Length=4042462 Score = 86.0 bits (94), Expect = 9e-11 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 || ||| | || || |||||||| ||||||||| ||||||| ||| |||| |||| ||| Sbjct 3025917 GGTGCCATTGGCGCACGCACCACGGAGAGCCAGCTGCACCGGGAGCTGGCTTCGGGCCTG 3025976 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCGACGGCCCTCGATGCC 165887 | | || | |||||||| ||| |||||||||||| | ||| ||| | || ||| Sbjct 3025977 TCCTTCCCTGTCGGCTTCAAGAACGGCACCGACGGCAACCTGGGTGTCGCCATTGACGCC 3026036 Query 165888 GT--GCGC-ACTGCCGCCCAGCCAC 165909 | |||| ||||||||| ||||| Sbjct 3026037 ATCGGCGCTGCTGCCGCCC-GCCAC 3026060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807052570966