Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq22 143 3e-29 seq11 113 5e-20 >seq22 Length=1908885 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| || |||||||||||| || |||| | || ||| Sbjct 662905 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 662964 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || || || ||| Sbjct 662965 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGA 663024 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||||||||| || || |||||||| ||||| || Sbjct 663025 ATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTG 663084 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || || || |||||||| Sbjct 663085 CCGGTGAGTGTCTTGACAAAGATTTGCAT 663113 Score = 136 bits (150), Expect = 4e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| ||||| || ||||| ||||||||||||| || || | || | Sbjct 662440 AGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGACAGC-GTCCG 662498 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || | ||| ||||| || ||||||| |||||||| || ||||| ||||| || Sbjct 662499 GCCATCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTC 662558 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || ||||| ||| | |||||| || |||||||| || || || Sbjct 662559 CTTGTCCTGAATCTTCGACTTGACGTTGTCGATTGTGTCCGAAGATTCCACTTCCAGCGT 662618 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || ||||| || | || || |||||||| ||||| Sbjct 662619 AATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 663115 CCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 663174 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || ||| || | ||| ||||| ||||| |||| |||||||| || ||||| Sbjct 663175 AGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 663234 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | || ||||| || || || Sbjct 663235 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGACC 663294 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 663295 TCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| ||||| |||||| ||||| || |||||||||||| Sbjct 1644183 CCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 1644124 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| |||||||| || |||| |||||||| || || || Sbjct 1644123 AGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 1644064 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||||||||| ||||| Sbjct 1644063 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGACTCCACC 1644004 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | || || ||||| || ||||| Sbjct 1644003 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1643957 Score = 113 bits (124), Expect = 5e-20 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGT-- 134553 || |||| ||| | ||| ||||| || ||||| || |||||||||| | || |||| Sbjct 662668 AGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGT--CAGACAGTGTCC 662725 Query 134554 GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | ||| || ||||| ||||| || ||||||| |||||||| ||||| || || || | Sbjct 662726 GGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCT 662785 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 | || ||||| || || || || ||| | |||||| ||||| || || || | | Sbjct 662786 CCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAACTTCCAACG 662845 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| || || ||||| | || || || || |||||||| Sbjct 662846 TAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 >seq11 Length=5116797 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || ||||| ||||| || |||||||||||| | || | Sbjct 2814755 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGG 2814814 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| |||| ||||||||| || ||||| ||||| || Sbjct 2814815 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 2814874 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || || || || ||||| || Sbjct 2814875 TTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTG 2814934 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 ||||| || || || | || || |||||| Sbjct 2814935 ATGGTCTTGCCCGTGAGGGTCTTCACGAAA 2814964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398128348360