Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq41 105 9e-18 >seq41 Length=3900177 Score = 105 bits (116), Expect = 9e-18 Identities = 286/431 (66%), Gaps = 5/431 (1%) Strand=Plus/Plus Query 69537 ATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAAC 69596 |||| ||| || | ||||| || || ||||||| | |||| | | | | || || Sbjct 918125 ATCAGCCAGGCCGGCGCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCAC 918184 Query 69597 TCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTC 69656 || ||||| || || ||||| ||||| || || | || ||||| | || | || Sbjct 918185 ACGCTTCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTC 918244 Query 69657 TTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTC 69716 || || ||| || || || ||||| ||||| | | ||| | |||||| || || Sbjct 918245 CTCCTTGCCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTC 918304 Query 69717 TAGATATAT-CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAG 69775 | || || | ||| | || || || || || || |||||||| | ||| | ||| | Sbjct 918305 CAAGTAGATGCAGAATG-CACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCG 918363 Query 69776 TGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAA 69835 |||| || |||| | ||||| || || || || || ||| | || || || || | || Sbjct 918364 TGTTGTTGAAGACACGAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAA 918423 Query 69836 TATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAG 69895 | ||| || | || ||||| | | | ||||| || || || ||| | || | Sbjct 918424 TGTAAGAGCCGGTAGCACGAATGCGATGGACATTCAGACCGATGCCACCAGCCGTCTTGG 918483 Query 69896 AGATTAGAGCACAACGT-TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG 69954 |||| | ||||| ||| || | ||||| || || ||||| ||||||||||| ||||| Sbjct 918484 AGATCATGGCACA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATG 918542 Query 69955 T-TAAGAAGAA 69964 | || || ||| Sbjct 918543 TCTACGAGGAA 918553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908430786520