Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq41 105 9e-18
>seq41
Length=3900177
Score = 105 bits (116), Expect = 9e-18
Identities = 286/431 (66%), Gaps = 5/431 (1%)
Strand=Plus/Plus
Query 69537 ATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAAC 69596
|||| ||| || | ||||| || || ||||||| | |||| | | | | || ||
Sbjct 918125 ATCAGCCAGGCCGGCGCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCAC 918184
Query 69597 TCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTC 69656
|| ||||| || || ||||| ||||| || || | || ||||| | || | ||
Sbjct 918185 ACGCTTCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTC 918244
Query 69657 TTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTC 69716
|| || ||| || || || ||||| ||||| | | ||| | |||||| || ||
Sbjct 918245 CTCCTTGCCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTC 918304
Query 69717 TAGATATAT-CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAG 69775
| || || | ||| | || || || || || || |||||||| | ||| | ||| |
Sbjct 918305 CAAGTAGATGCAGAATG-CACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCG 918363
Query 69776 TGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAA 69835
|||| || |||| | ||||| || || || || || ||| | || || || || | ||
Sbjct 918364 TGTTGTTGAAGACACGAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAA 918423
Query 69836 TATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAG 69895
| ||| || | || ||||| | | | ||||| || || || ||| | || |
Sbjct 918424 TGTAAGAGCCGGTAGCACGAATGCGATGGACATTCAGACCGATGCCACCAGCCGTCTTGG 918483
Query 69896 AGATTAGAGCACAACGT-TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG 69954
|||| | ||||| ||| || | ||||| || || ||||| ||||||||||| |||||
Sbjct 918484 AGATCATGGCACA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATG 918542
Query 69955 T-TAAGAAGAA 69964
| || || |||
Sbjct 918543 TCTACGAGGAA 918553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686908430786520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |