Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq41 113 1e-19 >seq41 Length=3900177 Score = 113 bits (124), Expect = 1e-19 Identities = 361/548 (66%), Gaps = 28/548 (5%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||||| || || ||| | ||||| ||||||||| ||| |||||||| ||||| || || Sbjct 918398 CGGCATCATCCCCATGCTTCGTGTCTTCAACAACACGGCCCGCTACGTGGATCAGGGTGG 918339 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGA 255087 | ||| || || || || ||| ||||||| ||||||||||||| ||||| | |||| Sbjct 918338 CAACAAGCGGCCCGGTGCATTCTGCATCTACTTGGAGCCGTGGCATGCCGATGTCTTTGA 918279 Query 255088 ACGGTTTTTACTGCTGTCCGACAAGACC--GGCACCGAGGAGCTGATCGCCCGCGACATC 255145 ||| | ||| || | ||| |||| |||||| | ||||| || | Sbjct 918278 ---GTTCCTCGACCTG--CGGAAGAACCAAGGCAAGGAGGAGGTCCGTGCCCGTGATCTT 918224 Query 255146 TACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGA--GACGAGACC 255202 | | ||| ||||| | ||| ||||| ||| || ||||| | || | |||| Sbjct 918223 TTCCTCGCACTCTGGATCCCCGACCTGTTCATGAAGCGTGTGGAGAAGAACGGCGAG--- 918167 Query 255203 TGGAGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTT 255262 |||| || ||||| |||||| || |||| || | || | | || || |||||| Sbjct 918166 TGGACGCTGATGTGCCCCAACGAATGCGCCGGCCTGGCTGATTGCTACGGCGAGGAGTTT 918107 Query 255263 GAAAAACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACG----CCAAGTGCCCG 255317 || ||||| | | |||||||| | || || | ||| | | |||| |||| Sbjct 918106 GAGGCTCTGTACGAGAAATACGAGCGCGAGGGTCGCGGTCGCAAGAAGATCAAG-GCCC- 918049 Query 255318 CGAAGAAGATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTAT 255377 ||||| | ||| | | || || |||| ||| || || | || ||| | Sbjct 918048 ---AGAAGCTGTGGTATGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCCTTCATGC 917992 Query 255378 TGCACAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGC 255436 | |||| |||||| || |||| | | ||||| ||| ||||| || ||| || Sbjct 917991 TCTACAAGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGTACCATCCGCAGC 917933 Query 255437 TCGAACCTGTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAAC 255496 |||||| ||||||| |||||| | || || | || | |||||||| || |||||| Sbjct 917932 TCGAACTTGTGCACGGAGATTGTCGAGTACTCGGCTCCGGACGAGGTGGCTGTGTGCAAC 917873 Query 255497 TTGGCGTC 255504 ||||| || Sbjct 917872 TTGGCCTC 917865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335124926135