Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq41 113 1e-19
>seq41
Length=3900177
Score = 113 bits (124), Expect = 1e-19
Identities = 361/548 (66%), Gaps = 28/548 (5%)
Strand=Plus/Minus
Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030
|||||| || || ||| | ||||| ||||||||| ||| |||||||| ||||| || ||
Sbjct 918398 CGGCATCATCCCCATGCTTCGTGTCTTCAACAACACGGCCCGCTACGTGGATCAGGGTGG 918339
Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGA 255087
| ||| || || || || ||| ||||||| ||||||||||||| ||||| | ||||
Sbjct 918338 CAACAAGCGGCCCGGTGCATTCTGCATCTACTTGGAGCCGTGGCATGCCGATGTCTTTGA 918279
Query 255088 ACGGTTTTTACTGCTGTCCGACAAGACC--GGCACCGAGGAGCTGATCGCCCGCGACATC 255145
||| | ||| || | ||| |||| |||||| | ||||| || |
Sbjct 918278 ---GTTCCTCGACCTG--CGGAAGAACCAAGGCAAGGAGGAGGTCCGTGCCCGTGATCTT 918224
Query 255146 TACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGA--GACGAGACC 255202
| | ||| ||||| | ||| ||||| ||| || ||||| | || | ||||
Sbjct 918223 TTCCTCGCACTCTGGATCCCCGACCTGTTCATGAAGCGTGTGGAGAAGAACGGCGAG--- 918167
Query 255203 TGGAGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTT 255262
|||| || ||||| |||||| || |||| || | || | | || || ||||||
Sbjct 918166 TGGACGCTGATGTGCCCCAACGAATGCGCCGGCCTGGCTGATTGCTACGGCGAGGAGTTT 918107
Query 255263 GAAAAACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACG----CCAAGTGCCCG 255317
|| ||||| | | |||||||| | || || | ||| | | |||| ||||
Sbjct 918106 GAGGCTCTGTACGAGAAATACGAGCGCGAGGGTCGCGGTCGCAAGAAGATCAAG-GCCC- 918049
Query 255318 CGAAGAAGATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTAT 255377
||||| | ||| | | || || |||| ||| || || | || ||| |
Sbjct 918048 ---AGAAGCTGTGGTATGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCCTTCATGC 917992
Query 255378 TGCACAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGC 255436
| |||| |||||| || |||| | | ||||| ||| ||||| || ||| ||
Sbjct 917991 TCTACAAGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGTACCATCCGCAGC 917933
Query 255437 TCGAACCTGTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAAC 255496
|||||| ||||||| |||||| | || || | || | |||||||| || ||||||
Sbjct 917932 TCGAACTTGTGCACGGAGATTGTCGAGTACTCGGCTCCGGACGAGGTGGCTGTGTGCAAC 917873
Query 255497 TTGGCGTC 255504
||||| ||
Sbjct 917872 TTGGCCTC 917865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588335124926135
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |