Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq41 158 2e-33 >seq41 Length=3900177 Score = 158 bits (174), Expect = 2e-33 Identities = 1043/1652 (63%), Gaps = 51/1652 (3%) Strand=Plus/Plus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 || ||||| || || || ||| |||||| || | ||||| | | || |||||| Sbjct 917148 ATCTCCCACACCGTCTTGTACAGAGCCTTGATGTCTGCCGGGATGTTGGGAATGTTCTGG 917207 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || ||||| | | | ||| | | |||||| | | ||||| ||||| || | Sbjct 917208 ATCGAACCGTTCTCGGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGTCG 917267 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 ||||| |||| || | |||||| | |||||||| || || | | | Sbjct 917268 ACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCACCGGCCAGCACACGCCGC 917327 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 ||| ||||| | |||||| || || ||||| || || || |||| || |||| || Sbjct 917328 GAGTAAATGTTGGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGACGTC 917387 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 || || || ||||| || |||| || |||||||| || | ||| | ||||||||| | Sbjct 917388 GACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATC--T 917445 Query 110825 TC--CTTGAGAACATCCCAGTCGTAGTTGAGCT-TGGTTTCACCTTCCCACATGTCAAAC 110881 || | || ||||| || | | | ||| | || | |||||||||| | Sbjct 917446 TCAGCCGCAGCGAGTCCCAATCCCACAGGTCCGATGGCGTGACAT-CCCACATGTCGGGC 917504 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 || || | || || ||| | ||||| |||||| | || | |||| || | | Sbjct 917505 TGCAGAATACCCTGCGACACAGGAGACCCCTCATATGTCTGGTAGGTGCCCTCAATCTTG 917564 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 |||| || || | || ||| | ||||| || ||||| ||||||| | ||| Sbjct 917565 GCCAGCTCGCACGACTCCGTCAGCGCCGCGTGGTAGATGGTCTCAAAGACCTGCTTGTTC 917624 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCG 111056 | | || || || ||||| |||| |||| || || | |||| Sbjct 917625 AGCAGGCGTGCCTCGGGAGACTCAAAGGGCATGCGCAGCGCCAGGAAGG-----CGTCCG 917679 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 111116 | ||||| || ||||||| |||||| || | ||| ||||| ||| || || || ||| Sbjct 917680 CCAGACCCTGCACACCCAGACCAATGGGACGGTGGCGCATGTTACTGTTCCGTGCT-TCT 917738 Query 111117 CA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175 || || || | || ||||||| ||||| || || | ||| | || ||| Sbjct 917739 GGCACAGGGTAGTAGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCAGCTGCGTG 917798 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT----TCATTGACATACTTTGG 111231 | || || ||| | | | ||| | ||| || | | | ||| | || Sbjct 917799 ACATCGTGCAGTCTCTGGAAGTCATA----CGACTCGTTGTTATAGTCGACGAAAGACGG 917854 Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 ||| || | || ||||| ||||| |||||| ||| ||| | | | |||||| | ||| Sbjct 917855 AAGAGCCAAAGAGGCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGAGTACTCGACAAT 917914 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 || || || ||||| || || || || |||| ||||| ||||| ||||| ||| Sbjct 917915 CTCCGTGCACAAGTTCGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTT 917974 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 ||| ||||||||||||||| |||| | |||||||||||||| | | ||||| || Sbjct 917975 GCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGC 918034 Query 111412 CTTCCA-AACATCGGCGGC-TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTT 111469 | ||| | | || | | | || | | ||| | || ||||| |||||| || Sbjct 918035 ATACCACAGCTTCTGGGCCTTGATCTTCTTGCG--ACCGCGACCCTCGCGCTCGTATTTC 918092 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGG 111528 ||| || || ||||||||||| || || | || || || || || || || Sbjct 918093 TCGTACAGAGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCC-GGCGCATTCGTTGGG 918151 Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 || | || | ||| | || | ||| || ||||||||||| ||||| || ||||| Sbjct 918152 GCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATCCA 918211 Query 111589 CA--GGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645 | | || |||| ||||| | ||| || |||| || | |||||||| || | Sbjct 918212 GAGTGCGAGGAAA--AGATCACGGGCACGGA-CCTCCTCCTTGCCTTGGTTCTTCCGCAG 918268 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC-GATAGATC--- 111701 || |||||||| | || ||| || ||||| ||||| | |||| ||| || | | Sbjct 918269 GTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGA-TGCAGAATGCACCGG 918327 Query 111702 -CCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 || | | | ||| | |||| || ||||| || ||| ||| || || |||||||| Sbjct 918328 GCCGCTTGTTG-CCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCATG 918386 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 111820 || || || || | ||| || || || || ||| ||| | || | | Sbjct 918387 GGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAGCACGAATG 918446 Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880 ||||| | || || || || |||||| ||| ||||| |||||| | | || Sbjct 918447 CGATGGACATTCAGACCGATGCCACCAGCCGTCTTGGAGATCATGGCACACGTCTTGAGC 918506 Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940 || | ||||| || | || || ||||| || | | |||||||| ||||| | Sbjct 918507 GTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGCAGGAGGACAGC 918566 Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999 || | || || || || ||||| || || || | || || | || | || | | Sbjct 918567 TGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAGA-ACTTGTT 918625 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||| | || ||||||||| | ||| || | || || || ||| || | || Sbjct 918626 CGACATGTAGTTGTATGTCTCGACAACACGCTCCACATCATCGCCCCAGATACCAACGGC 918685 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGA 112117 || ||||| | ||||| ||| || || | || | ||||||||| |||| || Sbjct 918686 CACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTACCATCGAGC--TTGAGGAGG 918743 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| | ||| ||||| |||| |||||||| Sbjct 918744 TAGGACCGCTCCAGGGTCTTGAAGCCAAAGTA 918775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031662432800