Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq41 158 2e-33
>seq41
Length=3900177
Score = 158 bits (174), Expect = 2e-33
Identities = 1043/1652 (63%), Gaps = 51/1652 (3%)
Strand=Plus/Plus
Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584
|| ||||| || || || ||| |||||| || | ||||| | | || ||||||
Sbjct 917148 ATCTCCCACACCGTCTTGTACAGAGCCTTGATGTCTGCCGGGATGTTGGGAATGTTCTGG 917207
Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644
|| ||||| | | | ||| | | |||||| | | ||||| ||||| || |
Sbjct 917208 ATCGAACCGTTCTCGGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGTCG 917267
Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704
||||| |||| || | |||||| | |||||||| || || | | |
Sbjct 917268 ACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCACCGGCCAGCACACGCCGC 917327
Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764
||| ||||| | |||||| || || ||||| || || || |||| || |||| ||
Sbjct 917328 GAGTAAATGTTGGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGACGTC 917387
Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824
|| || || ||||| || |||| || |||||||| || | ||| | ||||||||| |
Sbjct 917388 GACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATC--T 917445
Query 110825 TC--CTTGAGAACATCCCAGTCGTAGTTGAGCT-TGGTTTCACCTTCCCACATGTCAAAC 110881
|| | || ||||| || | | | ||| | || | |||||||||| |
Sbjct 917446 TCAGCCGCAGCGAGTCCCAATCCCACAGGTCCGATGGCGTGACAT-CCCACATGTCGGGC 917504
Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941
|| || | || || ||| | ||||| |||||| | || | |||| || | |
Sbjct 917505 TGCAGAATACCCTGCGACACAGGAGACCCCTCATATGTCTGGTAGGTGCCCTCAATCTTG 917564
Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001
|||| || || | || ||| | ||||| || ||||| ||||||| | |||
Sbjct 917565 GCCAGCTCGCACGACTCCGTCAGCGCCGCGTGGTAGATGGTCTCAAAGACCTGCTTGTTC 917624
Query 111002 ATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCG 111056
| | || || || ||||| |||| |||| || || | ||||
Sbjct 917625 AGCAGGCGTGCCTCGGGAGACTCAAAGGGCATGCGCAGCGCCAGGAAGG-----CGTCCG 917679
Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 111116
| ||||| || ||||||| |||||| || | ||| ||||| ||| || || || |||
Sbjct 917680 CCAGACCCTGCACACCCAGACCAATGGGACGGTGGCGCATGTTACTGTTCCGTGCT-TCT 917738
Query 111117 CA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175
|| || || | || ||||||| ||||| || || | ||| | || |||
Sbjct 917739 GGCACAGGGTAGTAGTTGACATCAATGATGCGGTTCAGGTTGCGGACAACCAGCTGCGTG 917798
Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT----TCATTGACATACTTTGG 111231
| || || ||| | | | ||| | ||| || | | | ||| | ||
Sbjct 917799 ACATCGTGCAGTCTCTGGAAGTCATA----CGACTCGTTGTTATAGTCGACGAAAGACGG 917854
Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291
||| || | || ||||| ||||| |||||| ||| ||| | | | |||||| | |||
Sbjct 917855 AAGAGCCAAAGAGGCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGAGTACTCGACAAT 917914
Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351
|| || || ||||| || || || || |||| ||||| ||||| ||||| |||
Sbjct 917915 CTCCGTGCACAAGTTCGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTT 917974
Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411
||| ||||||||||||||| |||| | |||||||||||||| | | ||||| ||
Sbjct 917975 GCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGC 918034
Query 111412 CTTCCA-AACATCGGCGGC-TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTT 111469
| ||| | | || | | | || | | ||| | || ||||| |||||| ||
Sbjct 918035 ATACCACAGCTTCTGGGCCTTGATCTTCTTGCG--ACCGCGACCCTCGCGCTCGTATTTC 918092
Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGG 111528
||| || || ||||||||||| || || | || || || || || || ||
Sbjct 918093 TCGTACAGAGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCC-GGCGCATTCGTTGGG 918151
Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588
|| | || | ||| | || | ||| || ||||||||||| ||||| || |||||
Sbjct 918152 GCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATCCA 918211
Query 111589 CA--GGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645
| | || |||| ||||| | ||| || |||| || | |||||||| || |
Sbjct 918212 GAGTGCGAGGAAA--AGATCACGGGCACGGA-CCTCCTCCTTGCCTTGGTTCTTCCGCAG 918268
Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC-GATAGATC--- 111701
|| |||||||| | || ||| || ||||| ||||| | |||| ||| || | |
Sbjct 918269 GTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGA-TGCAGAATGCACCGG 918327
Query 111702 -CCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760
|| | | | ||| | |||| || ||||| || ||| ||| || || ||||||||
Sbjct 918328 GCCGCTTGTTG-CCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCATG 918386
Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 111820
|| || || || | ||| || || || || ||| ||| | || | |
Sbjct 918387 GGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAGCACGAATG 918446
Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880
||||| | || || || || |||||| ||| ||||| |||||| | | ||
Sbjct 918447 CGATGGACATTCAGACCGATGCCACCAGCCGTCTTGGAGATCATGGCACACGTCTTGAGC 918506
Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940
|| | ||||| || | || || ||||| || | | |||||||| ||||| |
Sbjct 918507 GTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGCAGGAGGACAGC 918566
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999
|| | || || || || ||||| || || || | || || | || | || | |
Sbjct 918567 TGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAGA-ACTTGTT 918625
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
||||| | || ||||||||| | ||| || | || || || ||| || | ||
Sbjct 918626 CGACATGTAGTTGTATGTCTCGACAACACGCTCCACATCATCGCCCCAGATACCAACGGC 918685
Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGA 112117
|| ||||| | ||||| ||| || || | || | ||||||||| |||| ||
Sbjct 918686 CACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTACCATCGAGC--TTGAGGAGG 918743
Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
||| | ||| ||||| |||| ||||||||
Sbjct 918744 TAGGACCGCTCCAGGGTCTTGAAGCCAAAGTA 918775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031662432800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |