Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq41 168 8e-37
>seq41
Length=3900177
Score = 168 bits (186), Expect = 8e-37
Identities = 1149/1816 (63%), Gaps = 55/1816 (3%)
Strand=Plus/Plus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
|| ||||||||||| |||||||| || ||| |||||||| | | ||||| |
Sbjct 916986 CGCAGGTAGTACATGCCCGTCTTCAGGCCCAGCTTCCAGCCCGTGAAGTGCATGCTCGTG 917045
Query 117897 AACTTGGAGAGGGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955
| |||| | ||| || || | |||| || ||||| || || || ||||| ||
Sbjct 917046 ATCTTGCCCATGGTCGG-CTCACGCATGTGGATGTTCAGCGACTGCGACTGGTCGATAAA 917104
Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTT---GATTTCCCACACAGT 118012
| || || ||||| ||||| | |||| | || || ||| |||||||| ||
Sbjct 917105 GGCACCACGGTCCGCAGCCATCTG---CACAATCGTCCGCTGAGAGATCTCCCACACCGT 917161
Query 118013 CCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGC 118072
| |||| || ||| || || | ||||| | || || ||||| || |||
Sbjct 917162 CTTGTACAGAGCCTTGATGTCTGCCGGGATGTTGGGAATGTTCTGGATCGA---ACCGTT 917218
Query 118073 CTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 118129
|| | | |||| | | |||||| | | ||||| ||||| || | || ||||
Sbjct 917219 CTCGGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTT 917278
Query 118130 CACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATT 118189
| || | ||||| || |||||||| || || || | | || || ||
Sbjct 917279 GAGCAGCCACGGGTTGACCACCTGGAACTCACCGGCCAGCACACGCCGCGAGTAAATGTT 917338
Query 118190 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGG 118249
|| ||||| ||||| |||||||| ||||| |||| || || | || || || || ||
Sbjct 917339 GGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGACGTCGACGCCGTCGG 917398
Query 118250 CATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC--CTTGAGA 118307
||| || |||| || || ||||| || | ||| | ||| | || ||| | ||
Sbjct 917399 CATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATC--TTCAGCCGCAGC 917456
Query 118308 GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCT 118367
| |||||| || | | | || | | | |||||| || ||| || |||||
Sbjct 917457 GAGTCCCAATCCCACAGGTCCGATGGCGTGACATCCCACATGTCGGGCTGCAGAATACCC 917516
Query 118368 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 118427
|| ||| | || || |||||| |||||| || | |||||||| || |||| ||| |
Sbjct 917517 TGCGACACAGGAGACCCCTCATATGTCTGGTAGGTGCCCTCAATCTTGGCCAGCTCGCAC 917576
Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAA--TGCGAGCATTCATT-GCCTTG 118484
| || || || ||||| || || || ||||| | ||| | |||| | | ||
Sbjct 917577 GACTCCGTCAGCGCCGCGTGGTAGATGGTCTCAAAGACCTGCTTG--TTCAGCAGGCGTG 917634
Query 118485 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544
||||| || ||||| | | || | | || | ||||| ||||| || |||
Sbjct 917635 -CCTCGGGAGACTCAAAGGGCATGCGCAGCGCCAGGAAGGCGTCCGCCAGACCCTGCACA 917693
Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC-CACGGGATAAAA 118603
|| || ||||| || || || | ||| ||| ||||| || ||| ||| || || |
Sbjct 917694 CCCAGACCAATGGGACGGTGGCGCATGTTACTGTTCCGTGCT-TCTGGCACAGGGTAGTA 917752
Query 118604 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC---TTTGTGATTTCATGAAG 118660
|| ||| || | | || || || | ||||||| | |||| || || ||
Sbjct 917753 GTTGACATCAATGATGCGGTTCAGGTT---GCGGACAACCAGCTGCGTGACATCGTGCAG 917809
Query 118661 CTTTTCGTAATCAAA--ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 118718
| | | | ||| | ||| || | | | | ||| | ||||| || | ||
Sbjct 917810 TCTCTGGAAGTCATACGACT-CGT-TGTTATAGTCGACGAAAGACGGAAGAGCCAAAGAG 917867
Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778
|||| || ||||||| ||| ||| | | | |||||| | ||| ||||||||||||
Sbjct 917868 GCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGAGTACTCGACAATCTCCGTGCACAAG 917927
Query 118779 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 118838
|| || || ||||| |||| |||||| || || ||| ||| || ||||||
Sbjct 917928 TTCGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTG 917987
Query 118839 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATC 118897
|| |||||| | || | ||||||||||| || | || ||||| || | ||| | | ||
Sbjct 917988 TAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCATACCACAGCTTC 918047
Query 118898 GGCAGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTT 118956
| || | | | ||| | || ||||| |||||| || ||| || || |
Sbjct 918048 TGGGCCTTGATCTTCTTGCG--ACCGCGACCCTCGCGCTCGTATTTCTCGTACAGAGCCT 918105
Query 118957 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTT-ATCTGGGCAGAAGAGAGAC 119015
||||||| || || | || | || || || || || | ||||| | || | |
Sbjct 918106 CAAACTCCTCGCCGTAGCAATCAGCCAGGCC-GGCGCATTCGTTGGGGCACATCAGCGTC 918164
Query 119016 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 119075
|| | || || ||| || ||||||||||| ||||| ||||||||||| || |||
Sbjct 918165 CACTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAA 918224
Query 119076 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 119135
||||| || || | || || | || || || |||| || | || || | |
Sbjct 918225 AGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAG 918284
Query 119136 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTTACGACGACCAGC 119191
| ||| || |||||||| |||| ||| | || || ||| || | | ||| |
Sbjct 918285 ACATCGGCATGCCACGGCTCCAAGTAGATGCAGAATGCACCGGGCCGCTTGTTG-CCACC 918343
Query 119192 CTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGA 119251
||| | || || | || ||| ||| || ||||||||||| || ||||| || | |||
Sbjct 918344 CTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCATGGGGATGATGCCGTTGGA 918403
Query 119252 TTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCG-TGGATGTGCATAC 119310
| ||| || || || ||| ||| | || | || || |||| | || ||
Sbjct 918404 TGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAGCAC-GAATGCGATGGACATTCAGAC 918462
Query 119311 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCAT 119370
| || || || ||| ||| ||||| || ||| | |||| || ||||||| || |
Sbjct 918463 CGATGCCACCAGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCT 918522
Query 119371 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTAC 119430
| || ||| |||| | | | |||||||||| |||| |||| | ||| || |
Sbjct 918523 CAATGCTATCATCCTTCATGTCTACGAGGAAGCAGGAGGACAGCTGAGCCTGGGGCGTGC 918582
Query 119431 CAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAG 119489
| |||||||| || || || | || || | || | || | | ||||| | || |||
Sbjct 918583 CGGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAGA-ACTTGTTCGACATGTAGTTGTAT 918641
Query 119490 GTCTC--CAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547
||||| ||| ||| | || || || ||||| | | || ||||||| ||
Sbjct 918642 GTCTCGACAACACG--CTCCACATCATCGCCCCAGATACCAACGGCCACGCGCATAATCA 918699
Query 119548 TGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGG 119607
||| || || || | | ||||||||||| | ||||||| | ||||| ||
Sbjct 918700 TGTGCTGCGGCCGCTCGACGATCTTACCATCGAGCTTGAGGAGGTAGGACCGCTCCAGGG 918759
Query 119608 TCTTGAGACCAAAATA 119623
|||||| ||||| ||
Sbjct 918760 TCTTGAAGCCAAAGTA 918775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434867591080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |