Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq41 168 8e-37 >seq41 Length=3900177 Score = 168 bits (186), Expect = 8e-37 Identities = 1149/1816 (63%), Gaps = 55/1816 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| |||||||| || ||| |||||||| | | ||||| | Sbjct 916986 CGCAGGTAGTACATGCCCGTCTTCAGGCCCAGCTTCCAGCCCGTGAAGTGCATGCTCGTG 917045 Query 117897 AACTTGGAGAGGGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955 | |||| | ||| || || | |||| || ||||| || || || ||||| || Sbjct 917046 ATCTTGCCCATGGTCGG-CTCACGCATGTGGATGTTCAGCGACTGCGACTGGTCGATAAA 917104 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTT---GATTTCCCACACAGT 118012 | || || ||||| ||||| | |||| | || || ||| |||||||| || Sbjct 917105 GGCACCACGGTCCGCAGCCATCTG---CACAATCGTCCGCTGAGAGATCTCCCACACCGT 917161 Query 118013 CCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGC 118072 | |||| || ||| || || | ||||| | || || ||||| || ||| Sbjct 917162 CTTGTACAGAGCCTTGATGTCTGCCGGGATGTTGGGAATGTTCTGGATCGA---ACCGTT 917218 Query 118073 CTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 118129 || | | |||| | | |||||| | | ||||| ||||| || | || |||| Sbjct 917219 CTCGGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTT 917278 Query 118130 CACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATT 118189 | || | ||||| || |||||||| || || || | | || || || Sbjct 917279 GAGCAGCCACGGGTTGACCACCTGGAACTCACCGGCCAGCACACGCCGCGAGTAAATGTT 917338 Query 118190 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGG 118249 || ||||| ||||| |||||||| ||||| |||| || || | || || || || || Sbjct 917339 GGATGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGACGTCGACGCCGTCGG 917398 Query 118250 CATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC--CTTGAGA 118307 ||| || |||| || || ||||| || | ||| | ||| | || ||| | || Sbjct 917399 CATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATC--TTCAGCCGCAGC 917456 Query 118308 GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCT 118367 | |||||| || | | | || | | | |||||| || ||| || ||||| Sbjct 917457 GAGTCCCAATCCCACAGGTCCGATGGCGTGACATCCCACATGTCGGGCTGCAGAATACCC 917516 Query 118368 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 118427 || ||| | || || |||||| |||||| || | |||||||| || |||| ||| | Sbjct 917517 TGCGACACAGGAGACCCCTCATATGTCTGGTAGGTGCCCTCAATCTTGGCCAGCTCGCAC 917576 Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAA--TGCGAGCATTCATT-GCCTTG 118484 | || || || ||||| || || || ||||| | ||| | |||| | | || Sbjct 917577 GACTCCGTCAGCGCCGCGTGGTAGATGGTCTCAAAGACCTGCTTG--TTCAGCAGGCGTG 917634 Query 118485 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544 ||||| || ||||| | | || | | || | ||||| ||||| || ||| Sbjct 917635 -CCTCGGGAGACTCAAAGGGCATGCGCAGCGCCAGGAAGGCGTCCGCCAGACCCTGCACA 917693 Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC-CACGGGATAAAA 118603 || || ||||| || || || | ||| ||| ||||| || ||| ||| || || | Sbjct 917694 CCCAGACCAATGGGACGGTGGCGCATGTTACTGTTCCGTGCT-TCTGGCACAGGGTAGTA 917752 Query 118604 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC---TTTGTGATTTCATGAAG 118660 || ||| || | | || || || | ||||||| | |||| || || || Sbjct 917753 GTTGACATCAATGATGCGGTTCAGGTT---GCGGACAACCAGCTGCGTGACATCGTGCAG 917809 Query 118661 CTTTTCGTAATCAAA--ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 118718 | | | | ||| | ||| || | | | | ||| | ||||| || | || Sbjct 917810 TCTCTGGAAGTCATACGACT-CGT-TGTTATAGTCGACGAAAGACGGAAGAGCCAAAGAG 917867 Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778 |||| || ||||||| ||| ||| | | | |||||| | ||| |||||||||||| Sbjct 917868 GCCAAGTTGCACACAGCCACCTCGTCCGGAGCCGAGTACTCGACAATCTCCGTGCACAAG 917927 Query 118779 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 118838 || || || ||||| |||| |||||| || || ||| ||| || |||||| Sbjct 917928 TTCGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTG 917987 Query 118839 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATC 118897 || |||||| | || | ||||||||||| || | || ||||| || | ||| | | || Sbjct 917988 TAGAGCATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCATACCACAGCTTC 918047 Query 118898 GGCAGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTT 118956 | || | | | ||| | || ||||| |||||| || ||| || || | Sbjct 918048 TGGGCCTTGATCTTCTTGCG--ACCGCGACCCTCGCGCTCGTATTTCTCGTACAGAGCCT 918105 Query 118957 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTT-ATCTGGGCAGAAGAGAGAC 119015 ||||||| || || | || | || || || || || | ||||| | || | | Sbjct 918106 CAAACTCCTCGCCGTAGCAATCAGCCAGGCC-GGCGCATTCGTTGGGGCACATCAGCGTC 918164 Query 119016 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 119075 || | || || ||| || ||||||||||| ||||| ||||||||||| || ||| Sbjct 918165 CACTCGCCGTTCTTCTCCACACGCTTCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAA 918224 Query 119076 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 119135 ||||| || || | || || | || || || |||| || | || || | | Sbjct 918225 AGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAG 918284 Query 119136 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTTACGACGACCAGC 119191 | ||| || |||||||| |||| ||| | || || ||| || | | ||| | Sbjct 918285 ACATCGGCATGCCACGGCTCCAAGTAGATGCAGAATGCACCGGGCCGCTTGTTG-CCACC 918343 Query 119192 CTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGA 119251 ||| | || || | || ||| ||| || ||||||||||| || ||||| || | ||| Sbjct 918344 CTGATCCACGTAGCGGGCCGTGTTGTTGAAGACACGAAGCATGGGGATGATGCCGTTGGA 918403 Query 119252 TTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCG-TGGATGTGCATAC 119310 | ||| || || || ||| ||| | || | || || |||| | || || Sbjct 918404 TGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAGCAC-GAATGCGATGGACATTCAGAC 918462 Query 119311 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCAT 119370 | || || || ||| ||| ||||| || ||| | |||| || ||||||| || | Sbjct 918463 CGATGCCACCAGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCT 918522 Query 119371 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTAC 119430 | || ||| |||| | | | |||||||||| |||| |||| | ||| || | Sbjct 918523 CAATGCTATCATCCTTCATGTCTACGAGGAAGCAGGAGGACAGCTGAGCCTGGGGCGTGC 918582 Query 119431 CAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAG 119489 | |||||||| || || || | || || | || | || | | ||||| | || ||| Sbjct 918583 CGGCGTTGAAAAGCGTCGGCGAGGCATGCGTAAAGA-ACTTGTTCGACATGTAGTTGTAT 918641 Query 119490 GTCTC--CAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 ||||| ||| ||| | || || || ||||| | | || ||||||| || Sbjct 918642 GTCTCGACAACACG--CTCCACATCATCGCCCCAGATACCAACGGCCACGCGCATAATCA 918699 Query 119548 TGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGG 119607 ||| || || || | | ||||||||||| | ||||||| | ||||| || Sbjct 918700 TGTGCTGCGGCCGCTCGACGATCTTACCATCGAGCTTGAGGAGGTAGGACCGCTCCAGGG 918759 Query 119608 TCTTGAGACCAAAATA 119623 |||||| ||||| || Sbjct 918760 TCTTGAAGCCAAAGTA 918775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434867591080