Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq41 163 3e-35
seq42 100 3e-16
>seq41
Length=3900177
Score = 163 bits (180), Expect = 3e-35
Identities = 935/1467 (64%), Gaps = 47/1467 (3%)
Strand=Plus/Minus
Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGTGTCTTGA 104213
|| ||||| |||| ||||| ||| | ||| || |||| |||||||||| |
Sbjct 918775 TACTTTGGCTTCAAGACCCTGGAGCGGTCCTACCTCCTCAA--GCTCGATGGTAAGATCG 918718
Query 104214 TGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273
| || || ||| ||||| | |||||||||||| | ||||| || || || | |
Sbjct 918717 TCGAGCGGCCGCAGCACATGATTATGCGCGTGGCCGTTGGTATCTGGGGCGATGATGTGG 918658
Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCA 104332
| ||| | ||||||||| || | ||||| | | || | || | || || | ||
Sbjct 918657 AGCGTGTTGTCGAGACATACAACTACATGTCGAACAAGT-TCTTTACGCATGCCTCGCCG 918599
Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAAC 104392
|| || ||||| || || || || | || ||||| |||||||| | | ||
Sbjct 918598 ACGCTTTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCCTCCTGCTTCCTCGTAGACATG 918539
Query 104393 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 104452
||||| || || | || ||||| | || || | | |||||| ||||| |||
Sbjct 918538 AAGGATGATAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAG 918479
Query 104453 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 104512
|||||| || || || || | ||||| | | || | ||| |||
Sbjct 918478 ACGGCTGGTGGCATCGGTCTGAATGTCCATCGCATTCGTGCTACCGGCTCTTACATTGCC 918419
Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572
|| || || || ||| | || || || || |||||||| || || ||| ||| ||
Sbjct 918418 GGCACTAACGGCACATCCAACGGCATCATCCCCATGCTTCGTGTCTTCAACAACACGGCC 918359
Query 104573 CGCTATGTAAATCAAGCTGGGCGTCGAAAGG----GATCTATC-GCAGTCTATCTTGAGC 104627
||||| || |||| | ||| | | | || | | || ||| |||| | ||||
Sbjct 918358 CGCTACGTGGATCAGGGTGG-CAACAAGCGGCCCGGTGCATTCTGCA-TCTACTTGGAGC 918301
Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687
| ||||| || ||| || | |||||||| || |||| |||||||| | |||||||
Sbjct 918300 CGTGGCATGCCGATGTCTTTGAGTTCCTCGACCTGCGGAAGAACCAAGGCAAGGAGGAGG 918241
Query 104688 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747
|| ||| ||||| ||| ||| |||||||| || || || ||||||||| | || |
Sbjct 918240 TCCGTGCCCGTGATCTTTTCCTCGCACTCTGGATCCCCGACCTGTTCATGAAGCGTGTGG 918181
Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCC 104806
|| ||| ||| | ||| | || | || || || || || || || || | ||| |
Sbjct 918180 AGAAGAACGGCGAGTGGACGCTGATGTGCCCCAACGAATGCGCC-GGCCTGGCTGATTGC 918122
Query 104807 GTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC- 104865
|| ||||||||||| || || ||| || |||||| || |||| ||| ||
Sbjct 918121 TACGGCGAGGAGTTTGAGGCTCTGTACGAGAAATACGAGCGCGAGGGTC--GCGGTCGCA 918064
Query 104866 -GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 104923
|| | | | || | || | ||||| | || ||||| || | || || ||||| ||
Sbjct 918063 AGAAGAT-CAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAGGCGCAGACGGAGACGGGC 918005
Query 104924 ACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 104983
| || | |||||| ||||| ||| ||| |||| ||||| || || ||||| |||||
Sbjct 918004 AACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGT 917945
Query 104984 GTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043
||| || || || | || || || || | || | | | || ||| |
Sbjct 917944 ACCATCCGCAGCTCGAACTTGTGCACGGAGATTGTCGAGTACTCGGCTCCGGACGAGGTG 917885
Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGA 105101
|||||||| ||| | || || | ||||| || | || || | | | |||| ||
Sbjct 917884 GCTGTGTGCAACTTGGCCTCTTTGGCTCTTCCGTCTTTCGTCGA-CTATA-ACAACGAGT 917827
Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAG 105161
| | ||| | | | ||| ||||| || ||| | || | ||||| ||| |
Sbjct 917826 CGTATGACTTCCAGAGACTGCACGATGTCACGCAGCTGGTTGTCCGCAACCTGAACCGCA 917767
Query 105162 TTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220
| |||||| || | ||||| || ||| || || || ||| ||| | ||||||
Sbjct 917766 TCATTGATGTCAACTACTACCCTGTGCCAGA-AGCACGGAACAGTAACATGCGCCACCGT 917708
Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA--- 105277
|| |||||||| ||||| |||||||| ||||| | ||| || ||| ||||
Sbjct 917707 CCCATTGGTCTGGGTGTGCAGGGTCTGGCGGACGCCTTC-----CTGGCGCTGCGCATGC 917653
Query 105278 --TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335
||||| || ||| || | || || | ||||||||||| || ||||
Sbjct 917652 CCTTTGAGTCTCCCGAGGCACGCCTGCTGAACAAGCAGGTCTTTGAGACCATCTACCACG 917593
Query 105336 CCGCTCTTGAGGCGAGT--TCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393
| || | ||| | |||| | ||| |||| || |||| || | || | || | |||
Sbjct 917592 CGGCGC-TGACG-GAGTCGTGCGAGCTGGCCAAGATTGAGGGCACCTACCAGACATATGA 917535
Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-AGC 105452
||| ||||| | || || || | || || || ||||||| | || | ||| |
Sbjct 917534 GGGGTCTCCTGTGTCGCAGGGTATTCTGCAGCCCGACATGTGGG-ATGTCACGCCATCGG 917476
Query 105453 TTCACTACGACTGGGAAGCTCTCAAG--GAACGCATCAAGGAGAAGGGTCTTCGTAACAG 105510
| | || ||||| | || | ||| ||||||||| | ||| | || |||||
Sbjct 917475 ACCTGTGGGATTGGGACTCGCTGCGGCTGAA--GATCAAGGAGCACGGTGTGCGCAACAG 917418
Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570
||| || |||| || ||||| || || || || |||| || |||| || || || ||
Sbjct 917417 TCTGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCACAGATTCTGGGCAACAACGAGTG 917358
Query 105571 CTTTGAACCCTACACGACGAACATCTA 105597
||| || || ||||| | ||||| ||
Sbjct 917357 CTTCGAGCCGTACACATCCAACATTTA 917331
>seq42
Length=705881
Score = 100 bits (110), Expect = 3e-16
Identities = 159/225 (71%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTC 94790
||| || || || | ||||| || || |||||| || ||| ||| | |||| ||||
Sbjct 321873 AGTCCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGCGCTGGATTGCTGACAAGGAGTC 321814
Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850
||||||| |||| ||| | ||||| || |||||||| || |||||| ||
Sbjct 321813 CA---CCTTTGCGCAGCGCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGG 321757
Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910
|||||| | || | |||||||||||||| || || ||||| ||||| |||||
Sbjct 321756 CGCCTTCTCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTC 321697
Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||| ||||| || || || |||||||| || ||| || |||||
Sbjct 321696 CAATGAGCTGATTTCCCGCGACGAGGGGCTGCACACCGACTTTGC 321652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260486497320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |