Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq41 163 3e-35 seq42 100 3e-16 >seq41 Length=3900177 Score = 163 bits (180), Expect = 3e-35 Identities = 935/1467 (64%), Gaps = 47/1467 (3%) Strand=Plus/Minus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGTGTCTTGA 104213 || ||||| |||| ||||| ||| | ||| || |||| |||||||||| | Sbjct 918775 TACTTTGGCTTCAAGACCCTGGAGCGGTCCTACCTCCTCAA--GCTCGATGGTAAGATCG 918718 Query 104214 TGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273 | || || ||| ||||| | |||||||||||| | ||||| || || || | | Sbjct 918717 TCGAGCGGCCGCAGCACATGATTATGCGCGTGGCCGTTGGTATCTGGGGCGATGATGTGG 918658 Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCA 104332 | ||| | ||||||||| || | ||||| | | || | || | || || | || Sbjct 918657 AGCGTGTTGTCGAGACATACAACTACATGTCGAACAAGT-TCTTTACGCATGCCTCGCCG 918599 Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAAC 104392 || || ||||| || || || || | || ||||| |||||||| | | || Sbjct 918598 ACGCTTTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCCTCCTGCTTCCTCGTAGACATG 918539 Query 104393 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 104452 ||||| || || | || ||||| | || || | | |||||| ||||| ||| Sbjct 918538 AAGGATGATAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAG 918479 Query 104453 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 104512 |||||| || || || || | ||||| | | || | ||| ||| Sbjct 918478 ACGGCTGGTGGCATCGGTCTGAATGTCCATCGCATTCGTGCTACCGGCTCTTACATTGCC 918419 Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || || || || ||| | || || || || |||||||| || || ||| ||| || Sbjct 918418 GGCACTAACGGCACATCCAACGGCATCATCCCCATGCTTCGTGTCTTCAACAACACGGCC 918359 Query 104573 CGCTATGTAAATCAAGCTGGGCGTCGAAAGG----GATCTATC-GCAGTCTATCTTGAGC 104627 ||||| || |||| | ||| | | | || | | || ||| |||| | |||| Sbjct 918358 CGCTACGTGGATCAGGGTGG-CAACAAGCGGCCCGGTGCATTCTGCA-TCTACTTGGAGC 918301 Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687 | ||||| || ||| || | |||||||| || |||| |||||||| | ||||||| Sbjct 918300 CGTGGCATGCCGATGTCTTTGAGTTCCTCGACCTGCGGAAGAACCAAGGCAAGGAGGAGG 918241 Query 104688 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 || ||| ||||| ||| ||| |||||||| || || || ||||||||| | || | Sbjct 918240 TCCGTGCCCGTGATCTTTTCCTCGCACTCTGGATCCCCGACCTGTTCATGAAGCGTGTGG 918181 Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCC 104806 || ||| ||| | ||| | || | || || || || || || || || | ||| | Sbjct 918180 AGAAGAACGGCGAGTGGACGCTGATGTGCCCCAACGAATGCGCC-GGCCTGGCTGATTGC 918122 Query 104807 GTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC- 104865 || ||||||||||| || || ||| || |||||| || |||| ||| || Sbjct 918121 TACGGCGAGGAGTTTGAGGCTCTGTACGAGAAATACGAGCGCGAGGGTC--GCGGTCGCA 918064 Query 104866 -GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 104923 || | | | || | || | ||||| | || ||||| || | || || ||||| || Sbjct 918063 AGAAGAT-CAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAGGCGCAGACGGAGACGGGC 918005 Query 104924 ACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 104983 | || | |||||| ||||| ||| ||| |||| ||||| || || ||||| ||||| Sbjct 918004 AACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGT 917945 Query 104984 GTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 ||| || || || | || || || || | || | | | || ||| | Sbjct 917944 ACCATCCGCAGCTCGAACTTGTGCACGGAGATTGTCGAGTACTCGGCTCCGGACGAGGTG 917885 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGA 105101 |||||||| ||| | || || | ||||| || | || || | | | |||| || Sbjct 917884 GCTGTGTGCAACTTGGCCTCTTTGGCTCTTCCGTCTTTCGTCGA-CTATA-ACAACGAGT 917827 Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAG 105161 | | ||| | | | ||| ||||| || ||| | || | ||||| ||| | Sbjct 917826 CGTATGACTTCCAGAGACTGCACGATGTCACGCAGCTGGTTGTCCGCAACCTGAACCGCA 917767 Query 105162 TTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220 | |||||| || | ||||| || ||| || || || ||| ||| | |||||| Sbjct 917766 TCATTGATGTCAACTACTACCCTGTGCCAGA-AGCACGGAACAGTAACATGCGCCACCGT 917708 Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA--- 105277 || |||||||| ||||| |||||||| ||||| | ||| || ||| |||| Sbjct 917707 CCCATTGGTCTGGGTGTGCAGGGTCTGGCGGACGCCTTC-----CTGGCGCTGCGCATGC 917653 Query 105278 --TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335 ||||| || ||| || | || || | ||||||||||| || |||| Sbjct 917652 CCTTTGAGTCTCCCGAGGCACGCCTGCTGAACAAGCAGGTCTTTGAGACCATCTACCACG 917593 Query 105336 CCGCTCTTGAGGCGAGT--TCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393 | || | ||| | |||| | ||| |||| || |||| || | || | || | ||| Sbjct 917592 CGGCGC-TGACG-GAGTCGTGCGAGCTGGCCAAGATTGAGGGCACCTACCAGACATATGA 917535 Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-AGC 105452 ||| ||||| | || || || | || || || ||||||| | || | ||| | Sbjct 917534 GGGGTCTCCTGTGTCGCAGGGTATTCTGCAGCCCGACATGTGGG-ATGTCACGCCATCGG 917476 Query 105453 TTCACTACGACTGGGAAGCTCTCAAG--GAACGCATCAAGGAGAAGGGTCTTCGTAACAG 105510 | | || ||||| | || | ||| ||||||||| | ||| | || ||||| Sbjct 917475 ACCTGTGGGATTGGGACTCGCTGCGGCTGAA--GATCAAGGAGCACGGTGTGCGCAACAG 917418 Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 ||| || |||| || ||||| || || || || |||| || |||| || || || || Sbjct 917417 TCTGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCACAGATTCTGGGCAACAACGAGTG 917358 Query 105571 CTTTGAACCCTACACGACGAACATCTA 105597 ||| || || ||||| | ||||| || Sbjct 917357 CTTCGAGCCGTACACATCCAACATTTA 917331 >seq42 Length=705881 Score = 100 bits (110), Expect = 3e-16 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTC 94790 ||| || || || | ||||| || || |||||| || ||| ||| | |||| |||| Sbjct 321873 AGTCCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGCGCTGGATTGCTGACAAGGAGTC 321814 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 ||||||| |||| ||| | ||||| || |||||||| || |||||| || Sbjct 321813 CA---CCTTTGCGCAGCGCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGG 321757 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 |||||| | || | |||||||||||||| || || ||||| ||||| ||||| Sbjct 321756 CGCCTTCTCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTC 321697 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| ||||| || || || |||||||| || ||| || ||||| Sbjct 321696 CAATGAGCTGATTTCCCGCGACGAGGGGCTGCACACCGACTTTGC 321652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260486497320