Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq22 140 1e-27
seq41 131 5e-25
seq11 102 2e-16
>seq22
Length=1908885
Score = 140 bits (154), Expect = 1e-27
Identities = 174/236 (74%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| || || ||||||||||| || || || || |
Sbjct 662879 TTTGCATACCACCACGCAGGCGGAGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGT 662938
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || || || || ||||||||||| || || ||||| |
Sbjct 662939 AGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 662998
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || || || || || || |||||||| || ||| || ||||| || |||| || ||
Sbjct 662999 CTGGCGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATCGTGTCGGAC 663057
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || || || || | ||||| ||||| ||||| || ||||| || |||||
Sbjct 663058 GACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 663113
Score = 114 bits (126), Expect = 4e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || || || ||||| || || || || || ||
Sbjct 662655 CATACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 662714
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | ||| || || || || || || || || || || || || || ||||| || ||
Sbjct 662715 AGACAGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGG 662774
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || || || || || | ||||| || || || | ||||| | ||
Sbjct 662775 AGGGATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTC 662834
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||| | |||| ||||| ||||| ||||| || ||||| || |||||
Sbjct 662835 AACTTCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || || || || || ||||| || ||||| || || || || | || || ||||||
Sbjct 662446 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCATCT 662505
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| | || || || || || || || || ||||| ||||| ||||| || || || |||
Sbjct 662506 TCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCC 662565
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
||||| || | || || || || || | || || | ||| ||||| || |||| |||
Sbjct 662566 TGAATCTTCGACTTGACGTTGTCGATTGTGTCCGAAGATTCCACTTCCAGCGTAATCGTC 662625
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || || || |||||||||||
Sbjct 662626 TTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657
Score = 113 bits (124), Expect = 1e-19
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||||||||| || | | || || || || || || ||||| || || || || |
Sbjct 663107 TTTGCATACCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGT 663166
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || || | || || ||||||||||| || || ||||| |
Sbjct 663167 AGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 663226
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || |||||||| || | || || || ||||| | ||| || |
Sbjct 663227 CTGGCGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAG 663286
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || ||||| || | ||||| ||||| || || || || || ||||||||
Sbjct 663287 ACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341
>seq41
Length=3900177
Score = 131 bits (144), Expect = 5e-25
Identities = 434/671 (65%), Gaps = 12/671 (2%)
Strand=Plus/Minus
Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324
|| || || ||||| || |||||| | || || || || | ||| || ||||| || ||
Sbjct 663440 ATCATCGCCAATGACCAGGGTAACCGCACCACACCGTCCTTCGTGGCCTTTACGGACACG 663381
Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384
||||| |||||||||| | || || || || | || || || | || || ||
Sbjct 663380 GAGCGGTTGATTGGTGACGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGTC 663321
Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATCTGA 349440
|| || || ||||| || ||||| | | || | ||| | || || | ||
Sbjct 663320 TTCGACGCCAAGCGGCTCATTGGCCGCAAGTTCGCCGACGCTGAGGTC----CAGGCGGA 663265
Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500
| | || || || || || | | || | ||| | || || || ||| | |||||
Sbjct 663264 TATGAAGCACTTCCCCTTCAAGATCATTG-ACAAGGC--TGGCAAGCCCATTGTCGAGGT 663208
Query 349501 TGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560
|| | || || || | || || || ||||| |||||||| || ||||| |
Sbjct 663207 CGAGTTCAAGGGCGAGAAGAAGCAGTTCACCCCCGAGGAAATTTCCTCCATGGTCCTGAC 663148
Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620
|| ||| || | ||||| | || | |||| || || | | ||||| || ||
Sbjct 663147 CAAGATGCGCGAGACCGCTGAGTCCTACCTCGGTGGCACCGTCAACAACGCTGTCATCAC 663088
Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680
|| || ||||| || || || | |||||| || || || || || || ||||||
Sbjct 663087 CGTTCCGGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGC 663028
Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740
|| | || || || | || || || || ||||| || || || ||||| || || ||
Sbjct 663027 CGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACGGCCGCTGCCATTGCCTACGGTCT 662968
Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800
|| || | | ||| || || | || || || || | ||||||||||||||
Sbjct 662967 CGACAAGAAGGTTGAGGGCGAGCGCAACGTCCTGATCTTCGACCTGGGTGGTGGTACTTT 662908
Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860
||||| || || || || |||| ||||| || || || || || | ||||| |||||
Sbjct 662907 CGATGTGTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGA 662848
Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920
|| || || ||||| || || || || || || ||||| || ||||| || || ||
Sbjct 662847 CACTCACCTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTTGTCAACGAGTT 662788
Query 349921 TAAGCGTCAAG 349931
||||| ||||
Sbjct 662787 CAAGCG-CAAG 662778
>seq11
Length=5116797
Score = 102 bits (112), Expect = 2e-16
Identities = 158/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567
||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 2814743 ATACCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 2814802
Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627
|| | || || ||||| || || || || ||||||||||| ||||| ||||| |||||
Sbjct 2814803 GACAGCGTCCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGC 2814862
Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || ||| || ||||| || || | || || | ||
Sbjct 2814863 GGGATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATGGTGTCCGAGGACTC 2814921
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| || || || | ||||| || || || || || || |||
Sbjct 2814922 GACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 2814964
Score = 86.0 bits (94), Expect = 2e-11
Identities = 102/138 (74%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
||||||||||| | || || ||| || || | ||||||||||||||||| || ||
Sbjct 3842661 CGTGGCACACCCAGCGTCACGTTC---TTCGACGACACACCAGCAAAGTGGAACGTGTTC 3842605
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || || | || |||||||| ||||||||||| | || || ||||| ||
Sbjct 3842604 AGCGTCATCTGCGTTGCAGGTTCACCAATCGACTGCGCTGCCAGCACACCCACCATCTCG 3842545
Query 377578 CCAGGATTGACAATAGCC 377595
|| || ||||| || |||
Sbjct 3842544 CCTGGGTTGACCATTGCC 3842527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515253565189529
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |