Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq22 140 1e-27 seq41 131 5e-25 seq11 102 2e-16 >seq22 Length=1908885 Score = 140 bits (154), Expect = 1e-27 Identities = 174/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| || || ||||||||||| || || || || | Sbjct 662879 TTTGCATACCACCACGCAGGCGGAGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGT 662938 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || ||||||||||| || || ||||| | Sbjct 662939 AGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 662998 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || || || || || || |||||||| || ||| || ||||| || |||| || || Sbjct 662999 CTGGCGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATCGTGTCGGAC 663057 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || | ||||| ||||| ||||| || ||||| || ||||| Sbjct 663058 GACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 663113 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| || || || || || || Sbjct 662655 CATACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 662714 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||| || || || || || || || || || || || || || ||||| || || Sbjct 662715 AGACAGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGG 662774 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || || || || || | ||||| || || || | ||||| | || Sbjct 662775 AGGGATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTC 662834 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| | |||| ||||| ||||| ||||| || ||||| || ||||| Sbjct 662835 AACTTCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || ||||| || || || || | || || |||||| Sbjct 662446 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCATCT 662505 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || || || || || || || || ||||| ||||| ||||| || || || ||| Sbjct 662506 TCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCC 662565 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || | || || || || || | || || | ||| ||||| || |||| ||| Sbjct 662566 TGAATCTTCGACTTGACGTTGTCGATTGTGTCCGAAGATTCCACTTCCAGCGTAATCGTC 662625 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || ||||||||||| Sbjct 662626 TTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || || || || || ||||| || || || || | Sbjct 663107 TTTGCATACCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGT 663166 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || | || || ||||||||||| || || ||||| | Sbjct 663167 AGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 663226 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || || || ||||| | ||| || | Sbjct 663227 CTGGCGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAG 663286 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | ||||| ||||| || || || || || |||||||| Sbjct 663287 ACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341 >seq41 Length=3900177 Score = 131 bits (144), Expect = 5e-25 Identities = 434/671 (65%), Gaps = 12/671 (2%) Strand=Plus/Minus Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || |||||| | || || || || | ||| || ||||| || || Sbjct 663440 ATCATCGCCAATGACCAGGGTAACCGCACCACACCGTCCTTCGTGGCCTTTACGGACACG 663381 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||||| |||||||||| | || || || || | || || || | || || || Sbjct 663380 GAGCGGTTGATTGGTGACGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGTC 663321 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATCTGA 349440 || || || ||||| || ||||| | | || | ||| | || || | || Sbjct 663320 TTCGACGCCAAGCGGCTCATTGGCCGCAAGTTCGCCGACGCTGAGGTC----CAGGCGGA 663265 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500 | | || || || || || | | || | ||| | || || || ||| | ||||| Sbjct 663264 TATGAAGCACTTCCCCTTCAAGATCATTG-ACAAGGC--TGGCAAGCCCATTGTCGAGGT 663208 Query 349501 TGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 || | || || || | || || || ||||| |||||||| || ||||| | Sbjct 663207 CGAGTTCAAGGGCGAGAAGAAGCAGTTCACCCCCGAGGAAATTTCCTCCATGGTCCTGAC 663148 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || | ||||| | || | |||| || || | | ||||| || || Sbjct 663147 CAAGATGCGCGAGACCGCTGAGTCCTACCTCGGTGGCACCGTCAACAACGCTGTCATCAC 663088 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || ||||| || || || | |||||| || || || || || || |||||| Sbjct 663087 CGTTCCGGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGC 663028 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || || || | || || || || ||||| || || || ||||| || || || Sbjct 663027 CGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACGGCCGCTGCCATTGCCTACGGTCT 662968 Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 || || | | ||| || || | || || || || | |||||||||||||| Sbjct 662967 CGACAAGAAGGTTGAGGGCGAGCGCAACGTCCTGATCTTCGACCTGGGTGGTGGTACTTT 662908 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 ||||| || || || || |||| ||||| || || || || || | ||||| ||||| Sbjct 662907 CGATGTGTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGA 662848 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920 || || || ||||| || || || || || || ||||| || ||||| || || || Sbjct 662847 CACTCACCTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTTGTCAACGAGTT 662788 Query 349921 TAAGCGTCAAG 349931 ||||| |||| Sbjct 662787 CAAGCG-CAAG 662778 >seq11 Length=5116797 Score = 102 bits (112), Expect = 2e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 2814743 ATACCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 2814802 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| || || || || ||||||||||| ||||| ||||| ||||| Sbjct 2814803 GACAGCGTCCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGC 2814862 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || ||| || ||||| || || | || || | || Sbjct 2814863 GGGATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATGGTGTCCGAGGACTC 2814921 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || || || || | ||||| || || || || || || ||| Sbjct 2814922 GACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA 2814964 Score = 86.0 bits (94), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 ||||||||||| | || || ||| || || | ||||||||||||||||| || || Sbjct 3842661 CGTGGCACACCCAGCGTCACGTTC---TTCGACGACACACCAGCAAAGTGGAACGTGTTC 3842605 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || || | || |||||||| ||||||||||| | || || ||||| || Sbjct 3842604 AGCGTCATCTGCGTTGCAGGTTCACCAATCGACTGCGCTGCCAGCACACCCACCATCTCG 3842545 Query 377578 CCAGGATTGACAATAGCC 377595 || || ||||| || ||| Sbjct 3842544 CCTGGGTTGACCATTGCC 3842527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253565189529