Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq41 302 5e-77 seq42 131 2e-25 seq40 113 5e-20 >seq41 Length=3900177 Score = 302 bits (334), Expect = 5e-77 Identities = 519/747 (69%), Gaps = 6/747 (1%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 |||||||| ||| | |||||| || || || |||||| ||||| ||| || Sbjct 918694 ATGCGCGTGGCCGTTGGTATCTGGGGCGATGATGTGGAGCGTGTTGTCGAGACATACAAC 918635 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| | |||| ||||||||| ||| |||| || || |||||||| || ||| Sbjct 918634 TACATGTCGAACAAGTTCTTTACGCATGCCTCGCCGACGCTTTTCAACGCCGGCACGCCC 918575 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || ||||| |||| ||||||||| || | ||||||||||| || || |||||| Sbjct 918574 CAGGCTCAGCTGTCCTCCTGCTTCCTCGTAGACATGAAGGATGATAGCATTGAGGGCATC 918515 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| ||||||||| ||||||| ||||||||| | | ||||| |||||| | | Sbjct 918514 TACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACGGCTGGTGGCATCGGTCTGAA- 918456 Query 53435 TGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || || | || | ||||| | |||| | || || || |||||| || | | Sbjct 918455 TG-TCCATCGCATTCGTGCTACCGGCTCTTACATTGCCGGCACTAACGGCACATCCAACG 918397 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||| | || ||||| || |||||||||||||||||||| ||||| | |||||||| Sbjct 918396 GCATCATCCCCATGCTTCGTGTCTTCAACAACACGGCCCGCTACGTGGATCAGGGTGGCA 918337 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||| ||||||| | ||||||||||| ||||| | | |||| Sbjct 918336 ACAAGCGGCCCGGTGCATTCTGCATCTACTTGGAGCCGTGGCATGCCGATGTCTTTGAGT 918277 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | ||||| ||||| ||| || || | || ||| | || |||||| || || | Sbjct 918276 TCCTCGACCTGCGGAAGAACCAAGGCAAGGAGGAGGTCCGTGCCCGTGATCTTTTCCTCG 918217 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || ||||| || ||||| |||||| | ||||||||| ||| |||||| |||| Sbjct 918216 CACTCTGGATCCCCGACCTGTTCATGAAGCGTGTGGAGAAGAACGGCGAGTGGACGCTGA 918157 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 ||||||| ||||| ||| ||||||| | | |||||| ||||||||| | | ||| Sbjct 918156 TGTGCCCCAACGAATGCGCCGGCCTGGCTGATTGCTACGGCGAGGAGTTTGAGGCTCTGT 918097 Query 53793 ATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 | || |||| || | |||| ||| |||||| ||||||| | || | ||| Sbjct 918096 ACGAGAAATACG-AGCGCGAGGGTCGCGGTCGCAAGAAGATCAAGGCCCAGAAGCTGTGG 918038 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 |||| || || || ||| ||||||||| | || | |||| ||||||||| Sbjct 918037 TATGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCCTTCATGCTCTACAAGGACCAC 917978 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||| |||||||||||||||||| Sbjct 917977 TGCAACCGCAAGAGCAACCAGAAGAAC 917951 Score = 138 bits (152), Expect = 1e-27 Identities = 311/455 (68%), Gaps = 27/455 (6%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| ||||| |||||||| ||||| || ||||||||| | ||||| |||||||| Sbjct 917425 CGCAACAGTCTGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCACAGATTCTGGGCAAC 917366 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||||||||| ||||||| ||| ||| || || || |||||| Sbjct 917365 AACGAGTGCTTCGAGCCGTACACATCCAACATTTACTCGCGGCGTGTGCTGGCCGGTGAG 917306 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || ||||| | || ||||||||||| | || |||| Sbjct 917305 TTCCAGGTGGTCAACCCGTGGCTGCTCAAGGACCTGGTCGACATGGGTCTGTGGTCGGAC 917246 Query 55664 CAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATT 55717 | || |||| || || |||| |||| || || ||||||| || | || Sbjct 917245 AACATGAAGAACCGCATCATTGCCGAGAAC---GGTTCGATCCAGAACATTCCCAACAT- 917190 Query 55718 CCTCTGC-GTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775 | | || | | |||||| | ||| ||||||||||||||| | ||| || || Sbjct 917189 -CCCGGCAGACATCAAGGCTCTGTACAAGACGGTGTGGGAGATCTCTCAGCGGA---CGA 917134 Query 55776 TTG---ACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832 ||| | ||| ||| || |||||||| | ||||||||||| ||||| ||||||||| Sbjct 917133 TTGTGCAGATGGCTGCGGACCGTGGTGCCTTTATCGACCAGTCGCAGTCGCTGAACATCC 917074 Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGG-TGGAAG 55888 |||| | || | ||| |||| | |||| |||||| || ||||| |||||| Sbjct 917073 ACATGCGTGAGCCGACCATGGGCAAGATCACGAGC---ATGCAC-TTCACGGGCTGGAAG 917018 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| || |||||||| |||||||| ||||| || Sbjct 917017 CTGGGCCTGAAGACGGGCATGTACTACCTGCGCAC 916983 >seq42 Length=705881 Score = 131 bits (144), Expect = 2e-25 Identities = 311/460 (68%), Gaps = 19/460 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| ||||| ||||||||||| || ||| |||||||||||||| Sbjct 321364 TAGTCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATA 321423 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580 ||||||| ||||| | | || ||| | | | | | | || | | ||| || | Sbjct 321424 AAGTCGAAGGGGTTGGTGGAACGGTACACCTTGTCGT-TGCCGAGGGCGA-CCAGCAGAC 321481 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 | || || ||||| | |||||||||| |||| | | |||||| | || | Sbjct 321482 GGTCGGCAACAAACTCAATGTACTGCTTCATGAGGGTGGAGTTCATGCCCAGCAGAGCAC 321541 Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTGT 74700 ||||||| ||||| || | ||||| ||| | || | ||| | |||||| ||| Sbjct 321542 ACGGCAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACAGCA---TCGACAATAATGT 321598 Query 74701 ----GAATGTCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753 || ||| ||| |||| || | ||||||| ||| | ||| | || |||| Sbjct 321599 CCTGGATCATCTGCTTGCTCGGGCGGTTGT---TCAGGTGGGAGAACAGCAGGCA-GGCA 321654 Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813 || || ||| || || || | | |||| ||||| || || | || |||||| Sbjct 321655 AAGTCGGTGTGCAGCCCCTCGTCGCGGGAAATCAGCTCATTGGAGAAAGTCAGACCAGGC 321714 Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873 || || ||||||||||| | ||| ||||||| | |||||| || |||||||| ||||| Sbjct 321715 ATCAGGCCACGCTTCTTGAGCCAGAAGATGGAAGAGAAGGCGCCGCTGAAGAAAATGCCC 321774 Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG 74913 || || || || || || ||||| ||||| || |||| Sbjct 321775 TCAACGGCAGCGAATGCCACGAGGCGCTGCGC-AAAGGTG 321813 Score = 82.4 bits (90), Expect = 8e-11 Identities = 183/272 (67%), Gaps = 7/272 (3%) Strand=Plus/Plus Query 74999 CTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGA 75058 ||| | ||| ||||||| | ||||||| | || |||||||||||||| || || Sbjct 321960 CTCCTTGGGCTCCTTGATGTAGGTGTCAATGAGCAGAGAGTACGTCTCCGAGTGGATGTT 322019 Query 75059 CTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC--CTTT 75116 ||| | | |||| | | ||||| | || ||||| | | ||| || || | | Sbjct 322020 CTCCATCATGATCTGGAAGCCATAGAAGCAGCGAGCCTCAGGCACCTGGACCTCAGCGCT 322079 Query 75117 GAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGT 75176 ||| || | ||| ||||| |||||||||| || ||||| ||||| || || || Sbjct 322080 GAAGCGCTC--GACGAGGTTCTCGTTGACGATGCCATCAGAGGCAGCGAAGAAGGCGAGA 322137 Query 75177 ACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATCCTTCAGGTCC 75233 | ||| ||| ||||| ||||| | || |||| ||| || | ||||||| Sbjct 322138 ATGTGGGAGATGAAGAAACGCTCGTCGTCGTTCAGGCGGTTGTGCCAGTCGTGCAGGTCC 322197 Query 75234 CCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | || ||||||||||||| |||||||||| Sbjct 322198 TTGGACAGATCAATCTCCTCGGCCGTCCAGAA 322229 >seq40 Length=2234633 Score = 113 bits (124), Expect = 5e-20 Identities = 205/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| |||||||| ||||| | |||||| | |||||| | Sbjct 786868 GTGAAAATGTAACGAGCGCTGGCAGCATCTGCACCACCGGAAAGACGAGAACCGAAGTTA 786927 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || ||||| | | ||| | ||||||| || |||||||| || || | ||| Sbjct 786928 CCGCTAGGCTCAAGGCAGTTGATATTGTTGGAACCAACAAAGTTCTGTGCGAGACCCACA 786987 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || || || |||||||| || || | | | || | |||| | || Sbjct 786988 ATGGTCTGGTGCAGCGAAGCATCACCATGATGGTAGGAAGCCAACTTGGACACGGAACCA 787047 Query 117485 GCCAGCTGAGCCACC--TTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 ||||||| | |||| || || |||| | ||||||||| || |||| || || | Sbjct 787048 GCCAGCTCAAACACCTTTTGATCCTTGAC--AATGTTCTTCTTCAGACAGGTGTAGATAA 787105 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 |||||||||||| || || || || || ||| ||||| |||||| || |||| Sbjct 787106 CCTTGCGCTGACCCGGTTTGAGGCCGTCAATAACGGACGGGATGGAACGCATGTTGTC 787163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215705871400