Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq22 132 4e-26
>seq22
Length=1908885
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| || ||| | ||||| || ||||||||| | ||
Sbjct 662657 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACGCTGGAAGTGGAATCTTCG 662598
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || ||||| ||||| || ||||| || || || ||
Sbjct 662597 GACACAATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAG 662538
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| ||||| || |||||||| | ||| | || || ||||||
Sbjct 662537 CAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGGACGCTGTCGGACTACAAC 662478
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
||||| ||||||||||| | || |||| ||||| |||| || |||
Sbjct 662477 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGC 662430
Score = 122 bits (134), Expect = 8e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || || ||||||||| | ||||| | ||||| || ||||
Sbjct 662885 ATGCAAATCTTTGTCAAGACACTCACCGGCAAGACGATTACGTTGGAAGTTGAGTCGTCT 662826
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || |||||||| || || || || ||||| ||
Sbjct 662825 GACACAATCGACAACGTAAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAG 662766
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| ||||| || |||| ||| | ||| | || || ||||||
Sbjct 662765 CAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGGACACTGTCTGACTACAAC 662706
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || ||||||||||| | || ||||| ||||| |||| ||||| ||
Sbjct 662705 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGTAT 662656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434918166231360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |