Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq22 132 4e-26 >seq22 Length=1908885 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | ||||| || ||||||||| | || Sbjct 662657 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACGCTGGAAGTGGAATCTTCG 662598 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| || ||||| || || || || Sbjct 662597 GACACAATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAG 662538 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || |||||||| | ||| | || || |||||| Sbjct 662537 CAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGGACGCTGTCGGACTACAAC 662478 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| ||||||||||| | || |||| ||||| |||| || ||| Sbjct 662477 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGC 662430 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || ||||||||| | ||||| | ||||| || |||| Sbjct 662885 ATGCAAATCTTTGTCAAGACACTCACCGGCAAGACGATTACGTTGGAAGTTGAGTCGTCT 662826 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || |||||||| || || || || ||||| || Sbjct 662825 GACACAATCGACAACGTAAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAG 662766 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || |||| ||| | ||| | || || |||||| Sbjct 662765 CAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGGACACTGTCTGACTACAAC 662706 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || ||||| ||||| |||| ||||| || Sbjct 662705 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGTAT 662656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918166231360